RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ERVS71-1P61550 626 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 PPP3R1P63098 170 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 TBC1D28Q2M2D7 210 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 FJX1Q86VR8 437 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 C17orf78Q8N4C9 275 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 SEMA6DQ8NFY4 1073 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 SPSB4Q96A44 273 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 APOBEC3DQ96AK3 386 aaPredicted RBP17.36■□□□□ 0.37
CLN3-250ENST00000636839 JKAMPQ9P055 326 aa17.36■□□□□ 0.37
CLN3-250ENST00000636839 TAB1Q15750 504 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 LINC00299Q6ZSB3 139 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 LYPD6Q86Y78 171 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 CROCCP3Q8IVE0 287 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 JAGN1Q8N5M9 183 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 ZNF671Q8TAW3 534 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 DIRAS2Q96HU8 199 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 OR5V1Q9UGF6 321 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 IGHV1-18A0A0C4DH31 117 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 MTRF1O75570 445 aaKnown RBP17.35■□□□□ 0.37
CLN3-250ENST00000636839 RAB3AP20336 220 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 CFL1P23528 166 aaKnown RBP17.35■□□□□ 0.37
CLN3-250ENST00000636839 BDKRB2P30411 391 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 ZNF83P51522 516 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 REPIN1Q9BWE0 567 aaKnown RBP17.35■□□□□ 0.37
CLN3-250ENST00000636839 SP140LQ9H930 580 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 GPR173Q9NS66 373 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 NPAP1Q9NZP6 1156 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 MYEF2Q9P2K5 600 aaKnown RBP17.35■□□□□ 0.37
CLN3-250ENST00000636839 RHBDD3Q9Y3P4 386 aa17.35■□□□□ 0.37
CLN3-250ENST00000636839 ATXN7O15265 892 aaPredicted RBP17.34■□□□□ 0.37
CLN3-250ENST00000636839 SULT1B1O43704 296 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 CDSNQ15517 529 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 MZT2AQ6P582 158 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 CNIH2Q6PI25 160 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 OR51D1Q8NGF3 324 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 OR4D6Q8NGJ1 314 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 ACOT12Q8WYK0 555 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 KCTD12Q96CX2 325 aaKnown RBP17.34■□□□□ 0.37
CLN3-250ENST00000636839 CDH20Q9HBT6 801 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 HMG20AQ9NP66 347 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 TMEM138Q9NPI0 162 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 V9GYH0 126 aa17.34■□□□□ 0.37
CLN3-250ENST00000636839 CFAP46Q8IYW2 2715 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 LOC390937A0A1W2PQ73 354 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 XRCC2O43543 280 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 IGLV1-44P01699 117 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 RIPPLY1Q0D2K3 151 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 ZNF846Q147U1 533 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 IGFBP7Q16270 282 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 TIMM23BQ5SRD1 257 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 TMEM211Q6ICI0 200 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 FAM166AQ6J272 317 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 S100ZQ8WXG8 99 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 SLC25A28Q96A46 364 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 WDFY2Q96P53 400 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 RGCCQ9H4X1 137 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 CNTD2Q9H8S5 307 aa17.33■□□□□ 0.37
CLN3-250ENST00000636839 LILRA1O75019 489 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 ZNF35P13682 527 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 ZNF12P17014 697 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 CALCRP30988 508 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 OR8B8Q15620 311 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 CRIP3Q6Q6R5 217 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 ZFAND2BQ8WV99 257 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 AKAP1Q92667 903 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLN3-250ENST00000636839 STEAP1Q9UHE8 339 aa17.33■□□□□ 0.36
CLN3-250ENST00000636839 FAM25AB3EWG3 89 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 FAM25CB3EWG5 89 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 FAM25GB3EWG6 89 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 SMPD2O60906 423 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 CD37P11049 281 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 THBS4P35443 961 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 MAP2K3P46734 347 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 UQCRFS1P47985 274 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 EVX1P49640 407 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 ADORA2A-AS1P86434 159 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 SNTB1Q13884 538 aaKnown RBP17.32■□□□□ 0.36
CLN3-250ENST00000636839 SPANXN2Q5MJ10 180 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 GLT8D1Q68CQ7 371 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 PGAP1Q75T13 922 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 BHLHE23Q8NDY6 225 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 OR56B2PQ8NGI1 322 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 PIGTQ969N2 578 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 RFT1Q96AA3 541 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 SDHCQ99643 169 aaPredicted RBP17.32■□□□□ 0.36
CLN3-250ENST00000636839 CHST5Q9GZS9 411 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 TBCCD1Q9NVR7 557 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 ABRACLQ9P1F3 81 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 AMDHD2Q9Y303 409 aa17.32■□□□□ 0.36
CLN3-250ENST00000636839 SLC17A2O00624 439 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 GMDSO60547 372 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 AZGP1P25311 298 aaKnown RBP17.31■□□□□ 0.36
CLN3-250ENST00000636839 ETV6P41212 452 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 PSMD7P51665 324 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 IFITM3Q01628 133 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 MALLQ13021 153 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 PPA1Q15181 289 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 RAB11BQ15907 218 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 ZNF79Q15937 498 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 MRPL21Q7Z2W9 205 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms