RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ASCL1P50553 236 aa16.29■□□□□ 0.2
UPF1-210ENST00000600689 ADAMTS17Q8TE56 1095 aa16.29■□□□□ 0.2
UPF1-210ENST00000600689 ZNF285Q96NJ3 590 aa16.29■□□□□ 0.2
UPF1-210ENST00000600689 WDR77Q9BQA1 342 aaPredicted RBP16.29■□□□□ 0.2
UPF1-210ENST00000600689 COL4A2P08572 1712 aa16.29■□□□□ 0.2
UPF1-210ENST00000600689 TMED7-TICAM2A0A0A6YYA0 188 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 HCKP08631 526 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 THEGLP0DJG4 465 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 DHPSP49366 369 aaPredicted RBP16.28■□□□□ 0.2
UPF1-210ENST00000600689 RSPO4Q2I0M5 234 aaPredicted RBP16.28■□□□□ 0.2
UPF1-210ENST00000600689 PLAC9Q5JTB6 97 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 PRSS54Q6PEW0 395 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 RAB3CQ96E17 227 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 ARHGAP5-AS1Q96IT6 56 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 ZNF251Q9BRH9 671 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 TWSG1Q9GZX9 223 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 A0A0A6YYD4 124 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 H3BML4 177 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 OR13C7P0DN81 318 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 NME1P15531 152 aaKnown RBP16.28■□□□□ 0.2
UPF1-210ENST00000600689 HLA-GP17693 338 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 CX3CR1P49238 355 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 POU3F1Q03052 451 aaPredicted RBP16.28■□□□□ 0.2
UPF1-210ENST00000600689 ECH1Q13011 328 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 FNDC7Q5VTL7 733 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 HOGA1Q86XE5 327 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 C19orf47Q8N9M1 422 aaKnown RBP16.28■□□□□ 0.2
UPF1-210ENST00000600689 NAXEQ8NCW5 288 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 OR5H2Q8NGV7 314 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 SLC22A8Q8TCC7 542 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 SLC25A43Q8WUT9 341 aaPredicted RBP16.28■□□□□ 0.2
UPF1-210ENST00000600689 THRSPQ92748 146 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 NMES1Q9C002 83 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 PRODH2Q9UF12 536 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 FBXO7Q9Y3I1 522 aa16.28■□□□□ 0.2
UPF1-210ENST00000600689 C7orf77A4D0Y5 90 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 PRAMEF26H0Y7S4 382 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 CTSEP14091 401 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 ANOS1P23352 680 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 CSNK2A1P68400 391 aaPredicted RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 CYCSP99999 105 aaKnown RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 FUT7Q11130 342 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 FZD2Q14332 565 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.27■□□□□ 0.2
UPF1-210ENST00000600689 IAH1Q2TAA2 248 aaPredicted RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 FDX2Q6P4F2 183 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 TMEM151BQ8IW70 566 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 CSNK2A3Q8NEV1 391 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 ZNF701Q9NV72 531 aaPredicted RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 SLC2A8Q9NY64 477 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 EHFQ9NZC4 300 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 VDAC3Q9Y277 283 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 WIF1Q9Y5W5 379 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 NUP210LQ5VU65 1888 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 C5orf52A6NGY3 159 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 TSPAN15O95858 294 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 HOXB1P14653 301 aaPredicted RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 ZNF20P17024 532 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 SUPT4H1P63272 117 aaKnown RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 ROM1Q03395 351 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 C1orf140Q5VVS0 124 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 ZNF704Q6ZNC4 412 aaPredicted RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 AKR7LQ8NHP1 331 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 ARL5BQ96KC2 179 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 JSRP1Q96MG2 331 aaPredicted RBP16.27■□□□□ 0.2
UPF1-210ENST00000600689 C5orf34Q96MH7 638 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 SLC5A7Q9GZV3 580 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 TXNIPQ9H3M7 391 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 FBXL17Q9UF56 701 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 VPS13AQ96RL7 3174 aa16.27■□□□□ 0.2
UPF1-210ENST00000600689 DBX1A6NMT0 343 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 SFT2D2O95562 160 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 PRH1P02810 166 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 RABIFP47224 123 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 MIDNQ504T8 468 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 CARD17Q5XLA6 110 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 BSCL2Q96G97 398 aaPredicted RBP16.27■□□□□ 0.19
UPF1-210ENST00000600689 TPSD1Q9BZJ3 242 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 HS3ST3A1Q9Y663 406 aa16.27■□□□□ 0.19
UPF1-210ENST00000600689 SPTY2D1-AS1A0A0U1RR47 76 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 EIF1BO60739 113 aaKnown RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 CLN5O75503 358 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 CSTBP04080 98 aaKnown RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 EIF1P41567 113 aaKnown RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 C1orf100Q5SVJ3 147 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 HLA-DQA1Q5Y7H0 255 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 KLHL24Q6TFL4 600 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 ABHD12BQ7Z5M8 362 aaPredicted RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 SLC22A24Q8N4F4 322 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 ZNF519Q8TB69 540 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 CDC6Q99741 560 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 MRPS28Q9Y2Q9 187 aaKnown RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 NPIPA5E9PKD4 350 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 AHSA1O95433 338 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 CLPSP04118 112 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 FCGR2CP31995 323 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 SGCBQ16585 318 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 PRTGQ2VWP7 1150 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 TMEM244Q5VVB8 128 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 SKA3Q8IX90 412 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms