RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CD40P25942 277 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 ZNF83P51522 516 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 ZNF121P58317 390 aaPredicted RBP10.91□□□□□ -0.66
UPF1-208ENST00000600012 UBE2NP61088 152 aaKnown RBP10.91□□□□□ -0.66
UPF1-208ENST00000600012 VBP1P61758 197 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 RAB1AP62820 205 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 HGFACQ04756 655 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 LOXL1Q08397 574 aaPredicted RBP10.91□□□□□ -0.66
UPF1-208ENST00000600012 GPR50Q13585 617 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 CTF1Q16619 201 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 BCL2L15Q5TBC7 163 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 RHOUQ7L0Q8 258 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 MUC15Q8N387 334 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 C1orf162Q8NEQ5 155 aaPredicted RBP10.91□□□□□ -0.66
UPF1-208ENST00000600012 IL17RDQ8NFM7 739 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 RAB2BQ8WUD1 216 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 DGCR14Q96DF8 476 aaKnown RBP10.91□□□□□ -0.66
UPF1-208ENST00000600012 DOK1Q99704 481 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 COQ7Q99807 217 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 CENPOQ9BU64 300 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 NIPAL2Q9H841 368 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 SLC17A5Q9NRA2 495 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 TMEM160Q9NX00 188 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 OR52A1Q9UKL2 312 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 SLC25A15Q9Y619 301 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 ARFGEF3Q5TH69 2177 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 MALRD1Q5VYJ5 2156 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 C5orf63A6NC05 138 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 H7C417 338 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 M0R135 149 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 GABRPO00591 440 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 PHF1O43189 567 aaPredicted RBP10.9□□□□□ -0.66
UPF1-208ENST00000600012 CD1AP06126 327 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 ANXA2P07355 339 aaKnown RBP10.9□□□□□ -0.66
UPF1-208ENST00000600012 APEX1P27695 318 aaKnown RBP10.9□□□□□ -0.66
UPF1-208ENST00000600012 DCTDP32321 178 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 ARR3P36575 388 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 SLC6A9P48067 706 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 SPOCK1Q08629 439 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 SPCS2Q15005 226 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 GSG1Q2KHT4 349 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 RSPO1Q2MKA7 263 aaPredicted RBP10.9□□□□□ -0.66
UPF1-208ENST00000600012 CNPY1Q3B7I2 92 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 TIMM50Q3ZCQ8 353 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 ZNF544Q6NX49 715 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 FAM57BQ71RH2 274 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 NAA40Q86UY6 237 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 RDH10Q8IZV5 341 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 ZNF676Q8N7Q3 588 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 WDR31Q8NA23 367 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 CPEB3Q8NE35 698 aaKnown RBP10.9□□□□□ -0.66
UPF1-208ENST00000600012 OR10AC1Q8NH08 325 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 OR5AK2Q8NH90 309 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 FAM168AQ92567 244 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 SPTSSAQ969W0 71 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 ZNF799Q96GE5 643 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 PBOV1Q9GZY1 135 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 COMMD4Q9H0A8 199 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 TXNL4BQ9NX01 149 aaKnown RBP10.9□□□□□ -0.66
UPF1-208ENST00000600012 B3GNT2Q9NY97 397 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 SSR3Q9UNL2 185 aa10.9□□□□□ -0.66
UPF1-208ENST00000600012 ARPC4-TTLL3A0A0A6YYG9 625 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 TMEM212A6NML5 194 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 ZNF701M0R085 212 aaPredicted RBP10.89□□□□□ -0.67
UPF1-208ENST00000600012 CSF3P09919 207 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 ACSM4P0C7M7 580 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 BMP4P12644 408 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 OTX1P32242 354 aaPredicted RBP10.89□□□□□ -0.67
UPF1-208ENST00000600012 MAGEB1P43366 347 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 FABP6P51161 128 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 MMP16P51512 607 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 CCR9P51686 369 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 TPTEP56180 551 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 RPS11P62280 158 aaKnown RBP eCLIP10.89□□□□□ -0.67
UPF1-208ENST00000600012 ECH1Q13011 328 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 KRTAP27-1Q3LI81 207 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 C22orf42Q6IC83 251 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 CD200R1LQ6Q8B3 271 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 TMEM91Q6ZNR0 172 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 DPPA2Q7Z7J5 298 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 ZNF584Q8IVC4 421 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 ALDH16A1Q8IZ83 802 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 C17orf78Q8N4C9 275 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 ZNF525Q8N782 197 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 OR8B12Q8NGG6 310 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 ABHD4Q8TB40 342 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 NDNFQ8TB73 568 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 MS4A3Q96HJ5 214 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 PGAM5Q96HS1 289 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 BCL7BQ9BQE9 202 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 MOB1AQ9H8S9 216 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 LPAR3Q9UBY5 353 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 NUFIP1Q9UHK0 495 aaKnown RBP10.89□□□□□ -0.67
UPF1-208ENST00000600012 ZNF281Q9Y2X9 895 aa10.89□□□□□ -0.67
UPF1-208ENST00000600012 CUBNO60494 3623 aa10.88□□□□□ -0.67
UPF1-208ENST00000600012 LOC100509620A0A075B734 347 aa10.88□□□□□ -0.67
UPF1-208ENST00000600012 IQCMA0A1B0GVH7 501 aa10.88□□□□□ -0.67
UPF1-208ENST00000600012 LOC107986453A0A1B0GWG9 222 aa10.88□□□□□ -0.67
UPF1-208ENST00000600012 TRDV1A0A1B0GX56 115 aa10.88□□□□□ -0.67
UPF1-208ENST00000600012 A0A1W2PPW3 197 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms