RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 SGCAQ16586 387 aa11.15□□□□□ -0.62
CDK5RAP3-217ENST00000580287 CHMP1BQ7LBR1 199 aa11.15□□□□□ -0.62
CDK5RAP3-217ENST00000580287 CRLF2Q9HC73 371 aa11.15□□□□□ -0.62
CDK5RAP3-217ENST00000580287 CKLFQ9UBR5 152 aa11.15□□□□□ -0.62
CDK5RAP3-217ENST00000580287 KIAA1549Q9HCM3 1950 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ACTL6AO96019 429 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 IFNA7P01567 189 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CALCBP10092 127 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 LAP3P28838 519 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 RAD52P43351 418 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 PTH2RP49190 550 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 FOXG1P55316 489 aaPredicted RBP11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TEX30Q5JUR7 227 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 PDSS1Q5T2R2 415 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 HACD4Q5VWC8 232 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 GCNT2Q8N0V5 402 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 OR13C3Q8NGS6 347 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 FCAMRQ8WWV6 532 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 C20orf85Q9H1P6 137 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 UBQLN2Q9UHD9 624 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 FOXJ3Q9UPW0 622 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 DOCK7Q96N67 2140 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 DNPH1O43598 174 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TSPAN9O75954 239 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 SYNGR4O95473 234 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CFDP00746 253 aaPredicted RBP11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 RRASP10301 218 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CCR9P51686 369 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 UBE2MP61081 183 aaKnown RBP11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 HDDC2Q7Z4H3 204 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CATSPERDQ86XM0 798 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 SF3B5Q9BWJ5 86 aaKnown RBP11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ULBP2Q9BZM5 246 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 HRASLSQ9HDD0 168 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TAS2R4Q9NYW5 299 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 KLHL9Q9P2J3 617 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ASH2LQ9UBL3 628 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 STEAP1Q9UHE8 339 aa11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 FOXD3Q9UJU5 478 aaPredicted RBP11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 MCTS1Q9ULC4 181 aaKnown RBP11.14□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ARPC1BO15143 372 aaKnown RBP11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 RER1O15258 196 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 KRT33AO76009 404 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 KDM4BO94953 1096 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 PATE4P0C8F1 98 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ANXA7P20073 488 aaKnown RBP11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 GUCA2AQ02747 115 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 MAJINQ3KP22 176 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TSPO2Q5TGU0 170 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 C3P1Q6ZMU1 363 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CFAP77Q6ZQR2 320 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 NUFIP2Q7Z417 695 aaKnown RBP11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 BIVMQ86UB2 503 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 THNSL2Q86YJ6 484 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 RAB40AQ8WXH6 277 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CMTM3Q96MX0 182 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CLEC4MQ9H2X3 399 aaPredicted RBP11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 OR52A1Q9UKL2 312 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 NOSIPQ9Y314 301 aaKnown RBP11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 NUBP2Q9Y5Y2 271 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 R4GMQ9 66 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 MEIKINA0A087WXM9 373 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 LOC107986453A0A1B0GWG9 222 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 J3KRW8 73 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 BET1O15155 118 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 IGHG3P01860 377 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ITGA5P08648 1049 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 POU3F4P49335 361 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 FDX2Q6P4F2 183 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 C20orf196Q8IYI0 205 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 OR4D10Q8NGI6 311 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 OR52B4Q8NGK2 314 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 LHFPL5Q8TAF8 219 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ST7LQ8TDW4 575 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ASB5Q8WWX0 329 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TMEM54Q969K7 222 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 HAVCR1Q96D42 359 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 FAM122AQ96E09 287 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 AIFM2Q9BRQ8 373 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 MRI1Q9BV20 369 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 METTL17Q9H7H0 456 aaPredicted RBP11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 DKK4Q9UBT3 224 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 LHFPL6Q9Y693 200 aa11.13□□□□□ -0.63
CDK5RAP3-217ENST00000580287 KALRNO60229 2985 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 MED19A0JLT2 244 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 GABARAPH6UMI1 98 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 P2RY10O00398 339 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CPN1P15169 458 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TMPRSS3P57727 454 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TAS2R20P59543 309 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 SPOCK1Q08629 439 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 RAB11BQ15907 218 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CISD2Q8N5K1 135 aaKnown RBP11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 JAGN1Q8N5M9 183 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 TRIB1Q96RU8 372 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ZNF416Q9BWM5 594 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 CGGBP1Q9UFW8 167 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 HHLA2Q9UM44 414 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 ETV7Q9Y603 341 aa11.12□□□□□ -0.63
CDK5RAP3-217ENST00000580287 NBASA2RRP1 2371 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms