RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SLC25A40Q8TBP6 338 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 ADAT3Q96EY9 351 aaPredicted RBP13.88□□□□□ -0.19
SS18-211ENST00000578954 RNF167Q9H6Y7 350 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 ADGRG4Q8IZF6 3080 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.87□□□□□ -0.19
SS18-211ENST00000578954 SHISA3A0PJX4 238 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 CCDC160A6NGH7 325 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 DEFB108AA8MXU0 73 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 H3BSH0 61 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 J3QKU1 62 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 ABCD4O14678 606 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 SIAH2O43255 324 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 LMX1BO60663 402 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 RAC2P15153 192 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 IGFBP3P17936 291 aaPredicted RBP13.87□□□□□ -0.19
SS18-211ENST00000578954 THBS4P35443 961 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 DDOSTP39656 456 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 MTNR1BP49286 362 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 ERVS71-1P61550 626 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 RPS23P62266 143 aaKnown RBP13.87□□□□□ -0.19
SS18-211ENST00000578954 LSM3P62310 102 aaKnown RBP13.87□□□□□ -0.19
SS18-211ENST00000578954 SNTB2Q13425 540 aaKnown RBP13.87□□□□□ -0.19
SS18-211ENST00000578954 HSD17B12Q53GQ0 312 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 MBNL2Q5VZF2 373 aaKnown RBP13.87□□□□□ -0.19
SS18-211ENST00000578954 ZNF529Q6P280 563 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 PGAP1Q75T13 922 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 SEMA6DQ8NFY4 1073 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 KBTBD8Q8NFY9 601 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 SSC4DQ8WTU2 575 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 FAM222BQ8WU58 562 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 RADILQ96JH8 1075 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 OR2J1Q9GZK6 312 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 OR51B6Q9H340 312 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 CRIM1Q9NZV1 1036 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 FOXJ3Q9UPW0 622 aa13.87□□□□□ -0.19
SS18-211ENST00000578954 FLNCQ14315 2725 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 ALX3O95076 343 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 CALRP27797 417 aaKnown RBP13.86□□□□□ -0.19
SS18-211ENST00000578954 TGFBR1P36897 503 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 KIR2DL3P43628 341 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 RIPPLY1Q0D2K3 151 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 HLXQ14774 488 aaPredicted RBP13.86□□□□□ -0.19
SS18-211ENST00000578954 SPCS2Q15005 226 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 TMEM42Q69YG0 159 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 USP43Q70EL4 1123 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 UTS2BQ765I0 119 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 OR56B2PQ8NGI1 322 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 KLF14Q8TD94 323 aaPredicted RBP13.86□□□□□ -0.19
SS18-211ENST00000578954 TMEM171Q8WVE6 324 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 PP6455Q8WZ26 134 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 FGGYQ96C11 551 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 HAVCR1Q96D42 359 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 PLPPR2Q96GM1 343 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 TMEM204Q9BSN7 226 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 CHST5Q9GZS9 411 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 ZNF442Q9H7R0 627 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 PLCE1Q9P212 2302 aa13.86□□□□□ -0.19
SS18-211ENST00000578954 CD300LBA8K4G0 201 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 IQCF6A8MYZ5 107 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 SHISA9B4DS77 424 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 CASKO14936 926 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 IL1AP01583 271 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 ZNF250P15622 560 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 SELEP16581 610 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 SRMP19623 302 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 KITLGP21583 273 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 MYL9P24844 172 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 MSMPQ1L6U9 139 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 ZNF718Q3SXZ3 478 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 SPATA46Q5T0L3 261 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 RGS7BPQ6MZT1 257 aaPredicted RBP13.85□□□□□ -0.19
SS18-211ENST00000578954 TPRA1Q86W33 373 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 SERPINA12Q8IW75 414 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 CSNK2A3Q8NEV1 391 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 UBASH3BQ8TF42 649 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 PIGTQ969N2 578 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 CMBLQ96DG6 245 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 DCSTAMPQ9H295 470 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 PLEKHA1Q9HB21 404 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 SNTG1Q9NSN8 517 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 PIGLQ9Y2B2 252 aa13.85□□□□□ -0.19
SS18-211ENST00000578954 IGLV3-9A0A075B6K5 115 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 TRAV8-7A0A075B6U6 113 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 ZNF816-ZNF321PA0A0X1KG74 233 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 A0A1W2PPK0 400 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 GGT3PA6NGU5 568 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 GOSR1O95249 250 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 CST4P01036 141 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 CD3EP07766 207 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 CD37P11049 281 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 FAHP16930 419 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 ZNF20P17024 532 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 MPV17P39210 176 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 SERPINB10P48595 397 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 PSG7Q13046 419 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 TMEM255AQ5JRV8 349 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 SLC22A25Q6T423 547 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 LRRTM1Q86UE6 522 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 NDNFQ8TB73 568 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 ORAI1Q96D31 301 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms