RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CDC14BO60729 498 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 TPOP07202 933 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 RFC3P40938 356 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 PER3P56645 1201 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 C6orf183Q5T699 404 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 ZNF767PQ75MW2 155 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 AAED1Q7RTV5 226 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 GPR137CQ8N3F9 429 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 NUDT16L1Q9BRJ7 211 aaKnown RBP17.77■□□□□ 0.44
CLN3-230ENST00000568076 POFUT1Q9H488 388 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 TMEM38BQ9NVV0 291 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 ZNF224Q9NZL3 707 aa17.77■□□□□ 0.44
CLN3-230ENST00000568076 ERVH48-1M5A8F1 160 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 SSX5O60225 188 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 DHRS3O75911 302 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 MPIG6BO95866 241 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 PRF1P14222 555 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 FAHP16930 419 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 CRYGSP22914 178 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 SSTR2P30874 369 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 GSK3AP49840 483 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 UBE2V2Q15819 145 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 SNAI3Q3KNW1 292 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 JMJD6Q6NYC1 403 aaPredicted RBP17.77■□□□□ 0.43
CLN3-230ENST00000568076 Q6ZSR3 168 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.77■□□□□ 0.43
CLN3-230ENST00000568076 BPIFB2Q8N4F0 458 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 OR2M7Q8NG81 312 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 OR13C8Q8NGS7 320 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 ALX4Q9H161 411 aaPredicted RBP17.77■□□□□ 0.43
CLN3-230ENST00000568076 BANF2Q9H503 90 aa17.77■□□□□ 0.43
CLN3-230ENST00000568076 BOKQ9UMX3 212 aaPredicted RBP17.77■□□□□ 0.43
CLN3-230ENST00000568076 UBE2QL1A1L167 161 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 OR14I1A6ND48 311 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 SCGNO76038 276 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 ECH1Q13011 328 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 PLAC9Q5JTB6 97 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 DCAF10Q5QP82 559 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 OR52W1Q6IF63 320 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 NPRL2Q8WTW4 380 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 ABHD3Q8WU67 409 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 SLC25A21Q9BQT8 299 aaPredicted RBP17.76■□□□□ 0.43
CLN3-230ENST00000568076 EDEM2Q9BV94 578 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 RTTNQ86VV8 2226 aa17.76■□□□□ 0.43
CLN3-230ENST00000568076 TMEM82A0PJX8 343 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 SOCS1O15524 211 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 SYNGR3O43761 229 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 SIX6O95475 246 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CSN2P05814 226 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CELA3AP09093 270 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 B4GALT1P15291 398 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 THBS4P35443 961 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 H2BFSP57053 126 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 HGFACQ04756 655 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 EIF3IQ13347 325 aaKnown RBP17.75■□□□□ 0.43
CLN3-230ENST00000568076 NKPD1Q17RQ9 610 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 SFRP5Q5T4F7 317 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 ATPAF1Q5TC12 328 aaPredicted RBP17.75■□□□□ 0.43
CLN3-230ENST00000568076 ABHD17BQ5VST6 288 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 C1QL2Q7Z5L3 287 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 FTMTQ8N4E7 242 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 OR2AK2Q8NG84 335 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 OR8H1Q8NGG4 311 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 KCNG3Q8TAE7 436 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CPT1CQ8TCG5 803 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 GPER1Q99527 375 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 FAM173AQ9BQD7 235 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 ZNF703Q9H7S9 590 aaPredicted RBP17.75■□□□□ 0.43
CLN3-230ENST00000568076 IL17BQ9UHF5 180 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 KCNK7Q9Y2U2 307 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 SGCEO43556 437 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CYTIPO60759 359 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CST2P09228 141 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CASRP41180 1078 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 ZNF81P51508 661 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 TSPAN5P62079 268 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 RAB35Q15286 201 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 KISS1Q15726 138 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 SCGB2B2Q4G0G5 96 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 C4orf46Q504U0 113 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 ZBTB37Q5TC79 503 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 HES3Q5TGS1 186 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 ZNF774Q6NX45 483 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CD163Q86VB7 1156 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 OR5D18Q8NGL1 313 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 SPTSSAQ969W0 71 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 CPNE4Q96A23 557 aaPredicted RBP17.75■□□□□ 0.43
CLN3-230ENST00000568076 UPB1Q9UBR1 384 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 PIGLQ9Y2B2 252 aa17.75■□□□□ 0.43
CLN3-230ENST00000568076 ANKRD34BA5PLL1 514 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 CHRM2P08172 466 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 OR4E1P0C645 316 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 ZNF806P0C7X5 589 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 PATE4P0C8F1 98 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 TMEM50BP56557 158 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 RAP2BP61225 183 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 TEX261Q6UWH6 196 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 UXS1Q8NBZ7 420 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 MRGPRFQ96AM1 343 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 SGK3Q96BR1 496 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms