RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SERTM2A0A1B0GWG4 89 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 SLC37A4O43826 429 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 FKBP6O75344 327 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 CTAG2O75638 210 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 TDP2O95551 362 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 ERCC1P07992 297 aaPredicted RBP2.94□□□□□ -1.94
LINC00560-201ENST00000564593 FGF4P08620 206 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 POLR2MP0CAP2 368 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 OR5H8P0DN80 308 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 CCNB1P14635 433 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 UCHL3P15374 230 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 MAGP20916 626 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 RPS9P46781 194 aaKnown RBP2.94□□□□□ -1.94
LINC00560-201ENST00000564593 CSNK1A1P48729 337 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 IFFO1Q0D2I5 559 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 ERCC8Q13216 396 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 FKBP1CQ5VVH2 108 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 TMEM220Q6QAJ8 160 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 MBOAT1Q6ZNC8 495 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 SSX9Q7RTT3 188 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 CD302Q8IX05 232 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 GABRG1Q8N1C3 465 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 ZFP41Q8N8Y5 198 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 BBOF1Q8ND07 529 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 EEF1AKMT3Q96AZ1 226 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 PRRC1Q96M27 445 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 CHAC1Q9BUX1 264 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 TEKT3Q9BXF9 490 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 MYOZ2Q9NPC6 264 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 TMEM9BQ9NQ34 198 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 FAM49BQ9NUQ9 324 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 UVRAGQ9P2Y5 699 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 SLC17A4Q9Y2C5 497 aa2.94□□□□□ -1.94
LINC00560-201ENST00000564593 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.94□□□□□ -1.94
LINC00560-201ENST00000564593 SCN9AQ15858 1988 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 CASC3O15234 703 aaKnown RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 CLDN11O75508 207 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 SERPINE2P07093 398 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 TLX1NBP0CAT3 122 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 HMOX2P30519 316 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 CEACAM3P40198 252 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 MRPL19P49406 292 aaKnown RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 ZNF138P52744 262 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 CRISP1P54107 249 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 HADHBP55084 474 aaKnown RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 CAV1Q03135 178 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 C2orf54Q08AI8 447 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 IL18Q14116 193 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 C1orf185Q5T7R7 199 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 TWF2Q6IBS0 349 aaKnown RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 DUX4L9Q6RFH8 374 aaPredicted RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 BIVMQ86UB2 503 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 IQCF2Q8IXL9 164 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 FAM86B1Q8N7N1 296 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 C8orf44Q96CB5 159 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 ATP6V1G3Q96LB4 118 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 OR2A5Q96R48 311 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 MICU1Q9BPX6 476 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 MTG1Q9BT17 334 aaPredicted RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 PARP12Q9H0J9 701 aaKnown RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 C20orf96Q9NUD7 363 aaPredicted RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 MTCH1Q9NZJ7 389 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 KCNE3Q9Y6H6 103 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 PARP14Q460N5 1801 aa2.93□□□□□ -1.94
LINC00560-201ENST00000564593 TNS1Q9HBL0 1735 aaKnown RBP2.93□□□□□ -1.94
LINC00560-201ENST00000564593 SIP14410 1827 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 PHIPQ8WWQ0 1821 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 A0A1W2PNU3 283 aaPredicted RBP2.92□□□□□ -1.94
LINC00560-201ENST00000564593 F8VZ95 297 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 SMKR1H3BMG3 65 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 H3BQF6 201 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 MAGEB4O15481 346 aaPredicted RBP2.92□□□□□ -1.94
LINC00560-201ENST00000564593 ENTPD5O75356 428 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 FAM107AO95990 144 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 HLA-DPB1P04440 258 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 ANXA8P13928 327 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 ZNF823P16415 610 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 WARSP23381 471 aaKnown RBP2.92□□□□□ -1.94
LINC00560-201ENST00000564593 STOMP27105 288 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 GTF2H1P32780 548 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 HSPA9P38646 679 aaKnown RBP2.92□□□□□ -1.94
LINC00560-201ENST00000564593 NAMPTP43490 491 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 RAB9AP51151 201 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 GNGT1P63211 74 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 DR1Q01658 176 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 SP4Q02446 784 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 TRAM2Q15035 370 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 PTGES3Q15185 160 aaKnown RBP2.92□□□□□ -1.94
LINC00560-201ENST00000564593 RGNQ15493 299 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 ZNF726P1Q15940 193 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 PSMD5Q16401 504 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 UBE2SQ16763 222 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 HSDL1Q3SXM5 330 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 ANXA8L1Q5VT79 327 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 TMEM53Q6P2H8 277 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 ARL9Q6T311 187 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 NELFCDQ8IXH7 590 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 SAXO1Q8IYX7 474 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 CYB561D1Q8N8Q1 229 aa2.92□□□□□ -1.94
LINC00560-201ENST00000564593 TTC29Q8NA56 475 aaPredicted RBP2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms