RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MIDNQ504T8 468 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 HIST2H3PS2Q5TEC6 136 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 OR2T2Q6IF00 324 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 TMEM229BQ8NBD8 167 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 OR52E2Q8NGJ4 325 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 OR4K13Q8NH42 304 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 Q8WTZ3 238 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 RNF166Q96A37 237 aaPredicted RBP11.86□□□□□ -0.51
CLK3-206ENST00000562078 MRGPRFQ96AM1 343 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 R3HDM4Q96D70 268 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 G6PC3Q9BUM1 346 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 SLC5A7Q9GZV3 580 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 C19orf12Q9NSK7 152 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 SIGLEC7Q9Y286 467 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 PUS1Q9Y606 427 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLK3-206ENST00000562078 MYO15AQ9UKN7 3530 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 A0A087WV62 115 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 CCDC187A0A096LP49 1063 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 A0A1B0GTH9 108 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 SMCO3A2RU48 225 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 ZNF736B4DX44 427 aaPredicted RBP11.86□□□□□ -0.51
CLK3-206ENST00000562078 LAMTOR5O43504 91 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 NME2P1O60361 137 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 RCBTB2O95199 551 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 GPR75O95800 540 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 TSPAN15O95858 294 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 IL2RAP01589 272 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 CT62P0C5K7 136 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 SNCAP37840 140 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 SRSF5Q13243 272 aaKnown RBP11.86□□□□□ -0.51
CLK3-206ENST00000562078 ELOCQ15369 112 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 ZNHIT3Q15649 155 aaPredicted RBP11.86□□□□□ -0.51
CLK3-206ENST00000562078 POC1BQ8TC44 478 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 SDF2Q99470 211 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 HIST1H2BLQ99880 126 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 MTHFD2LQ9H903 347 aaPredicted RBP11.86□□□□□ -0.51
CLK3-206ENST00000562078 BDP1A6H8Y1 2624 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 TECTAO75443 2155 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 ELOA3CA0A087WX78 387 aaPredicted RBP11.85□□□□□ -0.51
CLK3-206ENST00000562078 NPIPA5A0A0B4J1W7 369 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 A0A1B0GVT2 93 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 A6NNC1 897 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 C9J4A7 227 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 NPIPA7E9PJI5 369 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 TMEM127O75204 238 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 CYB5AP00167 134 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 SPARCP09486 303 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 NPIPA8P0DM63 369 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 HKR1P10072 659 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 GZMBP10144 247 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 Q499Y3 187 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 GGNBP1Q5YKI7 109 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 AWAT2Q6E213 333 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 ZNF627Q7L945 461 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 COX18Q8N8Q8 333 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 OR51F2Q8NH61 342 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 LMX1AQ8TE12 382 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 ZNF587Q96SQ5 575 aaPredicted RBP11.85□□□□□ -0.51
CLK3-206ENST00000562078 CAPN10Q9HC96 672 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 FBXO34Q9NWN3 711 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 CHRNA9Q9UGM1 479 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 IL17BQ9UHF5 180 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 UNC13CQ8NB66 2214 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 ERCC1P07992 297 aaPredicted RBP11.85□□□□□ -0.51
CLK3-206ENST00000562078 FGF7P21781 194 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 PPM1FP49593 454 aaPredicted RBP11.85□□□□□ -0.51
CLK3-206ENST00000562078 TOMM34Q15785 309 aaPredicted RBP11.85□□□□□ -0.51
CLK3-206ENST00000562078 PRICKLE4Q2TBC4 344 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 DCST2Q5T1A1 773 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 OR14K1Q8NGZ2 314 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 OR10AC1Q8NH08 325 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 TMEM239Q8WW34 195 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 LMF1Q96S06 567 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 ICAM5Q9UMF0 924 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 SEC16AO15027 2179 aa11.85□□□□□ -0.51
CLK3-206ENST00000562078 CABIN1Q9Y6J0 2220 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 A0A087WUJ7 227 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 TGIF2-C20orf24A0A0A6YYL0 155 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 SRPX2O60687 465 aaPredicted RBP11.84□□□□□ -0.51
CLK3-206ENST00000562078 RAB38P57729 211 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 NXPH1P58417 271 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 RAB1AP62820 205 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 RASGEF1BQ0VAM2 473 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 SLC10A1Q14973 349 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 ISXQ2M1V0 245 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 C2orf76Q3KRA6 126 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 C4orf17Q53FE4 359 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 DGAT2L6Q6ZPD8 337 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 THNSL2Q86YJ6 484 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 JAGN1Q8N5M9 183 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 TMEM104Q8NE00 496 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 OR51A4Q8NGJ6 313 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 LYPD6BQ8NI32 183 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 ANKRD9Q96BM1 317 aaPredicted RBP11.84□□□□□ -0.51
CLK3-206ENST00000562078 BPIFA2Q96DR5 249 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 PRR13Q9NZ81 148 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 FBXO7Q9Y3I1 522 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 HEATR5AQ86XA9 2040 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 MPDZO75970 2070 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 SPEGQ15772 3267 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms