RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 ZNF433Q8N7K0 673 aaPredicted RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 ZNF676Q8N7Q3 588 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 BCORP1Q8N888 145 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 NKAIN3Q8N8D7 197 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 ZNF615Q8N8J6 731 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 ZDHHC22Q8N966 263 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 PXT1Q8NFP0 134 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR4N2Q8NGD1 307 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR5T2Q8NGG2 359 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR4D10Q8NGI6 311 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR51L1Q8NGJ5 315 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR51A4Q8NGJ6 313 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR51S1Q8NGJ8 323 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR13C8Q8NGS7 320 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR9A4Q8NGU2 314 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR6N2Q8NGY6 317 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR6S1Q8NH40 331 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 OR10G6Q8NH81 332 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 CCL4L1Q8NHW4 92 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 COQ8AQ8NI60 647 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 STOML3Q8TAV4 291 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 RNF128Q8TEB7 428 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 SLC37A2Q8TED4 501 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 TNFAIP8L1Q8WVP5 186 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 HMGB4Q8WW32 186 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 ASB17Q8WXJ9 295 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 TAF15Q92804 592 aaKnown RBP eCLIP2.17□□□□□ -2.06
SPG11-223ENST00000560858 ATOH1Q92858 354 aaPredicted RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 ELSPBP1Q96BH3 223 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 FAM3DQ96BQ1 224 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 C8orf44Q96CB5 159 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 MSI2Q96DH6 328 aaKnown RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 FAHD2AQ96GK7 314 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 SLC41A2Q96JW4 573 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 BMFQ96LC9 184 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 DGAT2Q96PD7 388 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 TSSK2Q96PF2 358 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 AMELYQ99218 206 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 SMAD5Q99717 465 aaKnown RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 SLC25A21Q9BQT8 299 aaPredicted RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 NUDT16L1Q9BRJ7 211 aaKnown RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 PLA2G2FQ9BZM2 168 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 MS4A7Q9GZW8 240 aaPredicted RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 MFFQ9GZY8 342 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 CHRNA10Q9GZZ6 450 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 FXYD6Q9H0Q3 95 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 WDR13Q9H1Z4 485 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 TTYH1Q9H313 450 aaPredicted RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 KCNK15Q9H427 330 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 C12orf4Q9NQ89 552 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 WSB2Q9NYS7 404 aaPredicted RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 COQ3Q9NZJ6 369 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 UPB1Q9UBR1 384 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 PRODH2Q9UF12 536 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 EPHA6Q9UF33 1036 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 LAMP5Q9UJQ1 280 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 GMEB2Q9UKD1 530 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 KLK13Q9UKR3 277 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 ZNF346Q9UL40 294 aaKnown RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 VSIG4Q9Y279 399 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 MRPS33Q9Y291 106 aaKnown RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 CARHSP1Q9Y2V2 147 aaKnown RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 EML6Q6ZMW3 1958 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 CACNA1CQ13936 2221 aa2.17□□□□□ -2.06
SPG11-223ENST00000560858 KIAA0100Q14667 2235 aaKnown RBP2.17□□□□□ -2.06
SPG11-223ENST00000560858 NCOA6Q14686 2063 aaPredicted RBP2.16□□□□□ -2.06
SPG11-223ENST00000560858 TRAV36DV7A0A075B6V5 113 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TRAV18A0A075B6X5 111 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TBC1D3DA0A087WVF3 549 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TRBV6-7A0A0A0MS04 114 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TEX13DA0A0J9YY54 714 aaPredicted RBP2.16□□□□□ -2.06
SPG11-223ENST00000560858 A0A1B0GTH9 108 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 LOC107986453A0A1B0GWG9 222 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 CPED1A4D0V7 1026 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 RAB19A4D1S5 217 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 PRSS37A4D1T9 235 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 SYNDIG1LA6NDD5 238 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TVP23AA6NH52 213 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 FAM74A7A6NL05 159 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TBC1D3LB9A6J9 549 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 ALG1L2C9J202 215 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 ATP6V1G2-DDX39BF2Z307 99 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 F8VVB4 439 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 F8VWA3 439 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 H0YIG0 161 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 BLOC1S5-TXNDC5H3BN57 136 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 H7C1C5 153 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TSPAN4O14817 238 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 SCAMP1O15126 338 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TO15178 435 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 ZNF264O43296 627 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TSPAN2O60636 221 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 ALOX12BO75342 701 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 TSPAN9O75954 239 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 SCGNO76038 276 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 RPP14O95059 124 aaKnown RBP2.16□□□□□ -2.06
SPG11-223ENST00000560858 UTS2O95399 124 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 SIX6O95475 246 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 RAB3DO95716 219 aa2.16□□□□□ -2.06
SPG11-223ENST00000560858 PNPP00491 289 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms