RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 MED13LQ71F56 2210 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 TRBV5-7A0A0A0MS05 114 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 A0A0J9YW62 118 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SLC22A23A1A5C7 686 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ZNF724A8MTY0 619 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 LRRN3E7EW58 273 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 M0QZ24 198 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 CCRL2O00421 344 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 TNFSF11O14788 317 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SSX4O60224 188 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SLC16A7O60669 478 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 CYTIPO60759 359 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ZNF254O75437 659 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SULT1C4O75897 302 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 AQP8O94778 261 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 F10P00742 488 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SERPINA3P01011 423 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 APOC1P02654 83 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 MT-ND2P03891 347 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 EGR2P11161 476 aaPredicted RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 SPI1P17947 270 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 WT1P19544 449 aaPredicted RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 NPR2P20594 1047 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 PTNP21246 168 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 PCMT1P22061 227 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 GALP22466 123 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SLC2A5P22732 501 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 PAX7P23759 505 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 PSMB9P28065 219 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 CDKN2AP42771 156 aaKnown RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 MAGEA5P43359 124 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 LHX2P50458 406 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 GBX2P52951 348 aaPredicted RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 NUDT6P53370 316 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SUCLG1P53597 346 aaKnown RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 BIDP55957 195 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 WNT4P56705 351 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 CLDN15P56746 228 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 B3GALT5-AS1P59052 145 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SNRPEP62304 92 aaKnown RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 POU3F1Q03052 451 aaPredicted RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 FAM27E3Q08E93 113 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 RASGEF1BQ0VAM2 473 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 PMPCAQ10713 525 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 MLLT11Q13015 90 aaPredicted RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 SLC17A1Q14916 467 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 NEDD8Q15843 81 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 NADK2Q4G0N4 442 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 CCDC58Q4VC31 144 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 MESTQ5EB52 335 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 TEX30Q5JUR7 227 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 OR2A2Q6IF42 318 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 LAIR2Q6ISS4 152 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SLC18B1Q6NT16 456 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SLC25A24Q6NUK1 477 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 PAMR1Q6UXH9 720 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 Q6ZSN1 163 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 CREB3L2Q70SY1 520 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 FCRLAQ7L513 359 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SLC16A9Q7RTY1 509 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 FAM220AQ7Z4H9 259 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 P4HA3Q7Z4N8 544 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 DPPA2Q7Z7J5 298 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 MS4A15Q8N5U1 240 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 OR51G2Q8NGK0 314 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 OR5M1Q8NGP8 315 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 OR13F1Q8NGS4 319 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 OR6N1Q8NGY5 312 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 OR10D3Q8NH80 312 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ZNF519Q8TB69 540 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ZPLD1Q8TCW7 415 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ASB10Q8WXI3 467 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 UFD1Q92890 307 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ST6GALNAC6Q969X2 333 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 TMEM45BQ96B21 275 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ZNF524Q96C55 264 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 ADGRG7Q96K78 797 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 TSPAN32Q96QS1 320 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SIGLEC11Q96RL6 698 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 MGLLQ99685 303 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SSX3Q99909 188 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 NMNAT2Q9BZQ4 307 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 KCNN2Q9H2S1 579 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 TMEM185BQ9H7F4 350 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SP140LQ9H930 580 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 WDR76Q9H967 626 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SIAEQ9HAT2 523 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 RPRD1BQ9NQG5 326 aaKnown RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 BABAM2Q9NXR7 383 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 RSL24D1Q9UHA3 163 aaKnown RBP4.48□□□□□ -1.69
LDLR-209ENST00000558528 PLEKHA6Q9Y2H5 1048 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 GSTK1Q9Y2Q3 226 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 COMMD3-BMI1R4GMX3 469 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 FBN1P35555 2871 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 ATRQ13535 2644 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CROCCQ5TZA2 2017 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 IGKV3D-15A0A087WSY6 115 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 A0A1W2PPQ1 181 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 PINLYPA6NC86 204 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 FAM183AA6NL82 134 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms