RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 EPHA8P29322 1005 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 THBS4P35443 961 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 OR3A4PP47883 348 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 ECH1Q13011 328 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 ZNF273Q14593 569 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 ARL6IP1Q15041 203 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 SMAD2Q15796 467 aaKnown RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 MICBQ29980 383 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 PLAC9Q5JTB6 97 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 CARD17Q5XLA6 110 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 FAM89BQ8N5H3 189 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 PNLDC1Q8NA58 520 aaKnown RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 MARCH1Q8TCQ1 289 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 FAM71F1Q96KD3 344 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 PIGMQ9H3S5 423 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 CHMP1AQ9HD42 196 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 MBD2Q9UBB5 411 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 RP1P56715 2156 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 ALPK2Q86TB3 2170 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 CACNA1CQ13936 2221 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 IGHV5-10-1A0A0J9YXX1 117 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 TSPAN4O14817 238 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 SMAD9O15198 467 aaKnown RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 RER1O15258 196 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 ZNF17P17021 662 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 ZNF133P52736 654 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 PPIAP62937 165 aaKnown RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 NAAAQ02083 359 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 PTCRAQ6ISU1 281 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 TMPPEQ6ZT21 453 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 FOXL2NBQ6ZUU3 175 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 KCTD9Q7L273 389 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 PEG10Q86TG7 708 aaKnown RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 PPP1R3BQ86XI6 285 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 WDSUB1Q8N9V3 476 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 TMEM104Q8NE00 496 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 RAB18Q9NP72 206 aa11.91□□□□□ -0.5
SHMT2-222ENST00000555774 NXT1Q9UKK6 140 aaKnown RBP11.91□□□□□ -0.5
SHMT2-222ENST00000555774 BRWD1Q9NSI6 2320 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 SPAG17Q6Q759 2223 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 TEX13DA0A0J9YY54 714 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-222ENST00000555774 C5orf51A6NDU8 294 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 ZNF814B7Z6K7 855 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 F5H0A9 414 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-222ENST00000555774 F8VVB4 439 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 F8VWA3 439 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 SOCS1O15524 211 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 CA11O75493 328 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 SFT2D2O95562 160 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 GP1BAP07359 652 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 ATF4P18848 351 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-222ENST00000555774 SERPINF1P36955 418 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 TAS2R46P59540 309 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 TMEM176BQ3YBM2 270 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-222ENST00000555774 C10orf128Q5T292 105 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 RTL6Q6ICC9 239 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 MRPL14Q6P1L8 145 aaKnown RBP11.9□□□□□ -0.5
SHMT2-222ENST00000555774 GUSBP11Q6P575 273 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 FAM57BQ71RH2 274 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 GTPBP8Q8N3Z3 284 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-222ENST00000555774 OR5H2Q8NGV7 314 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 ZNF75AQ96N20 296 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 GPER1Q99527 375 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 OR10A2Q9H208 303 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 TAS2R3Q9NYW6 316 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 ZNF319Q9P2F9 582 aa11.9□□□□□ -0.5
SHMT2-222ENST00000555774 A0A0U1RQV5 110 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 A0A1W2PQM1 296 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 RAB19A4D1S5 217 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 EEF1E1-BLOC1S5C9J1V9 151 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 TEX46H3BTG2 121 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 CRTAPO75718 401 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-222ENST00000555774 SLC2A1P11166 492 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 MSR1P21757 451 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 GUCA1AP43080 201 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-222ENST00000555774 TMEM50BP56557 158 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 CCL7P80098 99 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 ATXN7L3Q14CW9 347 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-222ENST00000555774 PPA1Q15181 289 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 FAM74A1Q5RGS3 127 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 Q6ZSR3 168 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 C10orf35Q96D05 121 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 CCDC74BQ96LY2 380 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 WDR54Q9H977 334 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 CHCHD2Q9Y6H1 151 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-222ENST00000555774 SZT2Q5T011 3432 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 LY6G6EA0A0G2JKS1 128 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 NUDT19A8MXV4 375 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 TRIM77I1YAP6 450 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 LYL1P12980 280 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 TPT1P13693 172 aaKnown RBP11.89□□□□□ -0.51
SHMT2-222ENST00000555774 CSNK1A1P48729 337 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 LHFPL1Q86WI0 220 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 GJC3Q8NFK1 279 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 OR2I1PQ8NGU4 316 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 TMEM54Q969K7 222 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 CLDN23Q96B33 292 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 PIK3IP1Q96FE7 263 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 PGAM5Q96HS1 289 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 SPACA5Q96QH8 159 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms