RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 TRBV11-1A0A0K0K1C0 115 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 SMCO3A2RU48 225 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 PRSS37A4D1T9 235 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 VGLL3A8MV65 326 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 PPP1R2P9O14990 202 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 SS18L1O75177 396 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-205ENST00000550592 KRT14P02533 472 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 OR4Q2P0C623 313 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 ZDHHC11BP0C7U3 371 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 ADRB3P13945 408 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 FOLR1P15328 257 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 OTX1P32242 354 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-205ENST00000550592 FOXN2P32314 431 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 NAA10P41227 235 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-205ENST00000550592 RFX3P48380 749 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 YWHAGP61981 247 aaKnown RBP eCLIP3.15□□□□□ -1.91
LIMA1-205ENST00000550592 LAMTOR4Q0VGL1 99 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 ALX1Q15699 326 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 TMEM183BQ1AE95 376 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 DEFB109BQ30KR1 87 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 MYO7BQ6PIF6 2116 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 CERS6Q6ZMG9 384 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 TMEM150AQ86TG1 271 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 TMEM183AQ8IXX5 376 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 PDIK1LQ8N165 341 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 ACTRT1Q8TDG2 376 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 KIFAP3Q92845 792 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 SLC38A4Q969I6 547 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 CCDC126Q96EE4 140 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 PIK3IP1Q96FE7 263 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 TSSK3Q96PN8 268 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 FOXC2Q99958 501 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 GABARAPL3Q9BY60 117 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 SLC25A39Q9BZJ4 359 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-205ENST00000550592 OR51M1Q9H341 326 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 ANKRA2Q9H9E1 313 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 NEK6Q9HC98 313 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 SLCO1B3Q9NPD5 702 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 RAB20Q9NX57 234 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 UXTQ9UBK9 157 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-205ENST00000550592 LSM7Q9UK45 103 aaKnown RBP3.15□□□□□ -1.91
LIMA1-205ENST00000550592 DENND4CQ5VZ89 1909 aa3.15□□□□□ -1.91
LIMA1-205ENST00000550592 ZGRF1Q86YA3 2104 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 PLAC8L1A1L4L8 177 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 K7EM74 188 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 RAB29O14966 203 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 EEDO75530 441 aaKnown RBP3.14□□□□□ -1.91
LIMA1-205ENST00000550592 FTH1P02794 183 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 ZNF30P17039 623 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 CNR1P21554 472 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 CDKN1BP46527 198 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 TMED10P49755 219 aaKnown RBP3.14□□□□□ -1.91
LIMA1-205ENST00000550592 HMGCS1Q01581 520 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 TGM3Q08188 693 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 SMARCB1Q12824 385 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 ECH1Q13011 328 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 CAPRIN1Q14444 709 aaKnown RBP3.14□□□□□ -1.91
LIMA1-205ENST00000550592 RCN1Q15293 331 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 UBE2SQ16763 222 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 TTLL9Q3SXZ7 439 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 LYPD2Q6UXB3 125 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 SLC25A45Q8N413 288 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 DUSP18Q8NEJ0 188 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 CD300LFQ8TDQ1 290 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 TMEM159Q96B96 161 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 DNAJC19Q96DA6 116 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 TSNARE1Q96NA8 513 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 P2RX4Q99571 388 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 CHP1Q99653 195 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 HDHD3Q9BSH5 251 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-205ENST00000550592 FAM192AQ9GZU8 254 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 CDC42EP4Q9H3Q1 356 aaKnown RBP3.14□□□□□ -1.91
LIMA1-205ENST00000550592 RBAKQ9NYW8 714 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-205ENST00000550592 ING4Q9UNL4 249 aa3.14□□□□□ -1.91
LIMA1-205ENST00000550592 HIVEP2P31629 2446 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 OR2AG2A6NM03 316 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 LRRIQ3A6PVS8 624 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-205ENST00000550592 CDC7O00311 574 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 CYTH3O43739 400 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 OR2J3O76001 311 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 CLIC3O95833 236 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 HMGA1P17096 107 aaKnown RBP3.13□□□□□ -1.91
LIMA1-205ENST00000550592 ATF6P18850 670 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 AZU1P20160 251 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 OMGP23515 440 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 AK4P27144 223 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-205ENST00000550592 AQP2P41181 271 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 CXCL5P42830 114 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 CCR6P51684 374 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 NCBP2P52298 156 aaKnown RBP eCLIP3.13□□□□□ -1.91
LIMA1-205ENST00000550592 PAX5Q02548 391 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 DMTNQ08495 405 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 CDC20Q12834 499 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 CLINT1Q14677 625 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 LY6G6FQ5SQ64 297 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 ANKRD26P1Q6NSI1 321 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 MREGQ8N565 214 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 OR10R2Q8NGX6 335 aa3.13□□□□□ -1.91
LIMA1-205ENST00000550592 C2orf15Q8WU43 125 aaKnown RBP3.13□□□□□ -1.91
LIMA1-205ENST00000550592 IL22RA2Q969J5 263 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms