RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 SUMF1Q8NBK3 374 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 BVESQ8NE79 360 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 OR10H5Q8NGA6 315 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 OR4C16Q8NGL9 310 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 SCARB1Q8WTV0 552 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 PNPLA2Q96AD5 504 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 SRXN1Q9BYN0 137 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 IFT22Q9H7X7 185 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 GPN1Q9HCN4 374 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 FAM206AQ9NX38 181 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 TMEM269A0A1B0GVZ9 245 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 FIGNL2A6NMB9 653 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 ZNF726A6NNF4 738 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 LMX1BO60663 402 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 IL5P05113 134 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 ISG15P05161 165 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 ANXA2P07355 339 aaKnown RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 FGF2P09038 288 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 H2BFMP0C1H6 154 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 CD37P11049 281 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 C4BPBP20851 252 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 SRD5A2P31213 254 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 KCNMB1Q16558 191 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 HES3Q5TGS1 186 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 ZNF660Q6AZW8 331 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 BIVMQ86UB2 503 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 ADAMTS17Q8TE56 1095 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 DVL3Q92997 716 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 THOC3Q96J01 351 aaKnown RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 ZNF385AQ96PM9 386 aaKnown RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 PIGQQ9BRB3 760 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 UTP23Q9BRU9 249 aaKnown RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 MRI1Q9BV20 369 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 GPR87Q9BY21 358 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 SEC61A2Q9H9S3 476 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 ZC4H2Q9NQZ6 224 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 GDF2Q9UK05 429 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-210ENST00000538120 DHDHQ9UQ10 334 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 PCDHGA1Q9Y5H4 931 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 SESN1Q9Y6P5 492 aa9.48□□□□□ -0.89
CLIP1-210ENST00000538120 SNRPGP15A8MWD9 76 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 C21orf140B9A014 251 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 H3BUI4 141 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 TNFSF11O14788 317 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 GLSO94925 669 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-210ENST00000538120 F10P00742 488 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 RLN2P04090 185 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 MECP2P51608 486 aaKnown RBP9.47□□□□□ -0.89
CLIP1-210ENST00000538120 EIF3IQ13347 325 aaKnown RBP9.47□□□□□ -0.89
CLIP1-210ENST00000538120 FAM166AQ6J272 317 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 RPUSD3Q6P087 351 aaKnown RBP9.47□□□□□ -0.89
CLIP1-210ENST00000538120 GSG1LQ6UXU4 331 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 ZIC4Q8N9L1 334 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 THRSPQ92748 146 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 TMEM54Q969K7 222 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 C1orf198Q9H425 327 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 TAS2R4Q9NYW5 299 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 STEAP1Q9UHE8 339 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 KMT2EQ8IZD2 1858 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 LOC107986453A0A1B0GWG9 222 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 SMAD9O15198 467 aaKnown RBP9.47□□□□□ -0.89
CLIP1-210ENST00000538120 EIF1BO60739 113 aaKnown RBP9.47□□□□□ -0.89
CLIP1-210ENST00000538120 KDM4BO94953 1096 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 PPP3CBP16298 524 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 ACHEP22303 614 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 SORDQ00796 357 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 C17orf107Q6ZR85 190 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 GGNQ86UU5 652 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 TMEM123Q8N131 208 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 OR2AK2Q8NG84 335 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 OR9K2Q8NGE7 335 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 OR8S1Q8NH09 359 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 RAB40AQ8WXH6 277 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 PNRC2Q9NPJ4 139 aaKnown RBP9.47□□□□□ -0.89
CLIP1-210ENST00000538120 ETV7Q9Y603 341 aa9.47□□□□□ -0.89
CLIP1-210ENST00000538120 CACNA1CQ13936 2221 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 KRBOX1C9JBD0 128 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 F5H5P2 479 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 P2RY10O00398 339 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 APOC3P02656 99 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 TTRP02766 147 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 ITGA5P08648 1049 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 FSTP19883 344 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 CD96P40200 585 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 ID4P47928 161 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 CYB561P49447 251 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 ZNF133P52736 654 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-210ENST00000538120 CSNK2A1P68400 391 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-210ENST00000538120 FOXO1Q12778 655 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 GK2Q14410 553 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-210ENST00000538120 FAM74A1Q5RGS3 127 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 SPINK14Q6IE38 97 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-210ENST00000538120 OR51D1Q8NGF3 324 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 OR51S1Q8NGJ8 323 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 SLC25A28Q96A46 364 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 NAA11Q9BSU3 229 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-210ENST00000538120 TMEM138Q9NPI0 162 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 MED9Q9NWA0 146 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 IL17BQ9UHF5 180 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms