RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 COQ7Q99807 217 aa6.58□□□□□ -1.36
CD44-232ENST00000531118 SLC22A4Q9H015 551 aa6.58□□□□□ -1.36
CD44-232ENST00000531118 PAIP1Q9H074 479 aaKnown RBP6.58□□□□□ -1.36
CD44-232ENST00000531118 PPCSQ9HAB8 311 aa6.58□□□□□ -1.36
CD44-232ENST00000531118 RAP2CQ9Y3L5 183 aa6.58□□□□□ -1.36
CD44-232ENST00000531118 A6NIZ1 184 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.57□□□□□ -1.36
CD44-232ENST00000531118 SDHDO14521 159 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 RER1O15258 196 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 VIMP08670 466 aaKnown RBP6.57□□□□□ -1.36
CD44-232ENST00000531118 MUC1P15941 1255 aaPredicted RBP6.57□□□□□ -1.36
CD44-232ENST00000531118 AMY2BP19961 511 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 THBS3P49746 956 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 GSK3BP49841 420 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 LUMP51884 338 aaPredicted RBP6.57□□□□□ -1.36
CD44-232ENST00000531118 ABCE1P61221 599 aaKnown RBP6.57□□□□□ -1.36
CD44-232ENST00000531118 RAP1BP61224 184 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 RAP1AP62834 184 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 BLCAPP62952 87 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 IL5RAQ01344 420 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 MICBQ29980 383 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 STUMQ69YW2 141 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 C10orf99Q6UWK7 81 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 COLCA1Q6ZS62 124 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 MSRB3Q8IXL7 192 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 DYNAPQ8N1N2 210 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 OR5D13Q8NGL4 314 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 RPS4Y2Q8TD47 263 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 TMEM255BQ8WV15 326 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 LRRC29Q8WV35 223 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 SPRYD4Q8WW59 207 aaPredicted RBP6.57□□□□□ -1.36
CD44-232ENST00000531118 LIPHQ8WWY8 451 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 GTF2H4Q92759 462 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 ISOC1Q96CN7 298 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 SEH1LQ96EE3 360 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 SORT1Q99523 831 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 HDHD2Q9H0R4 259 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 MYLK2Q9H1R3 596 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 ERVK13-1Q9NX77 482 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 SLC25A37Q9NYZ2 338 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 PITPNC1Q9UKF7 332 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 POLR1DQ9Y2S0 133 aa6.57□□□□□ -1.36
CD44-232ENST00000531118 TEX13CA0A0J9YWL9 993 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 H0YAE9 185 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 GMDSO60547 372 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 SERPINB7O75635 380 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 GRPP07492 148 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 CTLA4P16410 223 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 COX7A1P24310 79 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 RBM34P42696 430 aaKnown RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 TGM4P49221 684 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 RPL14P50914 215 aaKnown RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 CTXN1P60606 82 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 KCNMB1Q16558 191 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 KCTD18Q6PI47 426 aaPredicted RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 SLC2A7Q6PXP3 512 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 PGAP1Q75T13 922 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 MRPL21Q7Z2W9 205 aaKnown RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 LHFPL4Q7Z7J7 247 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 WDR86Q86TI4 376 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 SBSPONQ8IVN8 264 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 NKAIN4Q8IVV8 208 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 LRRC75AQ8NAA5 344 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 OR9I1Q8NGQ6 314 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 UBLCP1Q8WVY7 318 aaPredicted RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 SLCO4A1Q96BD0 722 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 C12orf43Q96C57 262 aaKnown RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 FOXRED1Q96CU9 486 aaPredicted RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 DUS3LQ96G46 650 aaKnown RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 LYZL4Q96KX0 146 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 GAFA1Q96PS6 74 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 C20orf27Q9GZN8 174 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 TMEM38AQ9H6F2 299 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 ELL3Q9HB65 397 aaPredicted RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 ABCB10Q9NRK6 738 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 AP5S1Q9NUS5 200 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 ZIM2Q9NZV7 527 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 SLC25A10Q9UBX3 287 aaPredicted RBP6.56□□□□□ -1.36
CD44-232ENST00000531118 HAO1Q9UJM8 370 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 DSCAML1Q8TD84 2053 aa6.56□□□□□ -1.36
CD44-232ENST00000531118 CD300LBA8K4G0 201 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 TFF1P04155 84 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 ACSM4P0C7M7 580 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 IDO1P14902 403 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 RAB13P51153 203 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 LSM6P62312 80 aaKnown RBP6.55□□□□□ -1.36
CD44-232ENST00000531118 RPL23AP62750 156 aaKnown RBP6.55□□□□□ -1.36
CD44-232ENST00000531118 CSNK2BP67870 215 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 MALLQ13021 153 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 DUSP7Q16829 419 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 DGUOKQ16854 277 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 KRTAP27-1Q3LI81 207 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 MESTQ5EB52 335 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 CENPVQ7Z7K6 275 aaPredicted RBP6.55□□□□□ -1.36
CD44-232ENST00000531118 MKXQ8IYA7 352 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 KIRREL3Q8IZU9 778 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 FAM185AQ8N0U4 392 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 OR9Q1Q8NGQ5 310 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 IKZF5Q9H5V7 419 aa6.55□□□□□ -1.36
CD44-232ENST00000531118 RNPEPL1Q9HAU8 725 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms