RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TMPRSS9Q7Z410 1059 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 COMMD2Q86X83 199 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 CHMP1AQ9HD42 196 aaPredicted RBP17.03■□□□□ 0.32
VPS28-213ENST00000530983 CA14Q9ULX7 337 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 SRPK3Q9UPE1 567 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 ASCC3Q8N3C0 2202 aaKnown RBP17.03■□□□□ 0.32
VPS28-213ENST00000530983 CFAP54Q96N23 3096 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 C5orf51A6NDU8 294 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 GPR31O00270 319 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 CDC14BO60729 498 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 MPIG6BO95866 241 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 HOXB1P14653 301 aaPredicted RBP17.03■□□□□ 0.32
VPS28-213ENST00000530983 PTGDSP41222 190 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 OR5AP2Q8NGF4 316 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 TERB2Q8NHR7 220 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 WDR77Q9BQA1 342 aaPredicted RBP17.03■□□□□ 0.32
VPS28-213ENST00000530983 ESRP2Q9H6T0 727 aaKnown RBP17.03■□□□□ 0.32
VPS28-213ENST00000530983 MLXQ9UH92 298 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 PCDHB10Q9UN67 800 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 C13orf42A0A1B0GVH6 325 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 A0A1W2PP11 408 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 ZNF814B7Z6K7 855 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 TRAF3IP2O43734 574 aaPredicted RBP17.02■□□□□ 0.32
VPS28-213ENST00000530983 IGHG1P01857 330 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 PGAM2P15259 253 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 HIST1H1DP16402 221 aaKnown RBP17.02■□□□□ 0.32
VPS28-213ENST00000530983 TMEM50BP56557 158 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 ZNF121P58317 390 aaPredicted RBP17.02■□□□□ 0.32
VPS28-213ENST00000530983 TAS2R31P59538 309 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 OR4K17Q8NGC6 315 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 OR1S2Q8NGQ3 325 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 OR2AJ1Q8NGZ0 328 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 RAB3CQ96E17 227 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 TMEM41AQ96HV5 264 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 PIGMQ9H3S5 423 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 BANF2Q9H503 90 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 GPR84Q9NQS5 396 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 ASH2LQ9UBL3 628 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 CSAG2Q9Y5P2 127 aa17.02■□□□□ 0.32
VPS28-213ENST00000530983 RAD51DO75771 328 aa17.02■□□□□ 0.31
VPS28-213ENST00000530983 TIAF1O95411 115 aa17.02■□□□□ 0.31
VPS28-213ENST00000530983 GSTP1P09211 210 aaKnown RBP17.02■□□□□ 0.31
VPS28-213ENST00000530983 TMPPEQ6ZT21 453 aa17.02■□□□□ 0.31
VPS28-213ENST00000530983 ELP5Q8TE02 316 aa17.02■□□□□ 0.31
VPS28-213ENST00000530983 TMEM230Q96A57 120 aa17.02■□□□□ 0.31
VPS28-213ENST00000530983 PIK3IP1Q96FE7 263 aa17.02■□□□□ 0.31
VPS28-213ENST00000530983 C5orf66Q9H5L9 145 aa17.02■□□□□ 0.31
VPS28-213ENST00000530983 PNRC2Q9NPJ4 139 aaKnown RBP17.02■□□□□ 0.31
VPS28-213ENST00000530983 TRBV6-7A0A0A0MS04 114 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 A0A1W2PNR3 127 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 RER1O15258 196 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 GABREP78334 506 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 SMAD4Q13485 552 aaKnown RBP17.01■□□□□ 0.31
VPS28-213ENST00000530983 NKAIN1Q4KMZ8 207 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 TMEM128Q5BJH2 165 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 CARD17Q5XLA6 110 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 NAA40Q86UY6 237 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 LDLRAD3Q86YD5 345 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 PUSL1Q8N0Z8 303 aaKnown RBP17.01■□□□□ 0.31
VPS28-213ENST00000530983 OR10G3Q8NGC4 313 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 KCNG3Q8TAE7 436 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 STOML3Q8TAV4 291 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 RNF126Q9BV68 326 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 NMES1Q9C002 83 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 SDHAF3Q9NRP4 125 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 SLC39A1Q9NY26 324 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 COA4Q9NYJ1 87 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 MED12Q93074 2177 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 F8VVB4 439 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 F8VWA3 439 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 VAX1Q5SQQ9 334 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 SLC25A47Q6Q0C1 308 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 PGAP1Q75T13 922 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 ADPRHL1Q8NDY3 354 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 DCUN1D4Q92564 292 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 FAM71F1Q96KD3 344 aaPredicted RBP17.01■□□□□ 0.31
VPS28-213ENST00000530983 TSNAXQ99598 290 aaKnown RBP17.01■□□□□ 0.31
VPS28-213ENST00000530983 TMEM59Q9BXS4 323 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 GPR132Q9UNW8 380 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 WIF1Q9Y5W5 379 aa17.01■□□□□ 0.31
VPS28-213ENST00000530983 WDR87Q6ZQQ6 2873 aa17■□□□□ 0.31
VPS28-213ENST00000530983 TEX13DA0A0J9YY54 714 aaPredicted RBP17■□□□□ 0.31
VPS28-213ENST00000530983 CEACAM18A8MTB9 384 aa17■□□□□ 0.31
VPS28-213ENST00000530983 LINC01387J3KSC0 135 aa17■□□□□ 0.31
VPS28-213ENST00000530983 MSX1P28360 303 aa17■□□□□ 0.31
VPS28-213ENST00000530983 CX3CR1P49238 355 aa17■□□□□ 0.31
VPS28-213ENST00000530983 NPY4RP50391 375 aa17■□□□□ 0.31
VPS28-213ENST00000530983 RABEPKQ7Z6M1 372 aa17■□□□□ 0.31
VPS28-213ENST00000530983 ARRDC1Q8N5I2 433 aa17■□□□□ 0.31
VPS28-213ENST00000530983 RRNAD1Q96FB5 475 aaKnown RBP17■□□□□ 0.31
VPS28-213ENST00000530983 IGLV3-32A0A0A0MS00 114 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 FGF16O43320 207 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 RAMP1O60894 148 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 CCL1P22362 96 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 GUCA2BQ16661 112 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 FAM69BQ5VUD6 431 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 ZNF574Q6ZN55 896 aaPredicted RBP16.99■□□□□ 0.31
VPS28-213ENST00000530983 CCDC36Q8IYA8 594 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 ROBO4Q8WZ75 1007 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms