RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CAPZA1P52907 286 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 SNAI3Q3KNW1 292 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 ZNF529Q6P280 563 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 CDH26Q8IXH8 852 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 ADAT3Q96EY9 351 aaPredicted RBP18.39■□□□□ 0.53
VPS28-212ENST00000530836 REEP6Q96HR9 211 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 POM121L2Q96KW2 1035 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 LYZL4Q96KX0 146 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 STEAP1Q9UHE8 339 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 ETV7Q9Y603 341 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 LRRK2Q5S007 2527 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 LOC100509620A0A075B734 347 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 C5orf49A4QMS7 147 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 ZNF503-AS2A6NEH8 195 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 VGLL3A8MV65 326 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 J3QRK9 145 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 BDKRB2P30411 391 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 CHRNB4P30926 498 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 THBS4P35443 961 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 TALDO1P37837 337 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 HGFACQ04756 655 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 SAMD12Q8N8I0 201 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 OR1M1Q8NGA1 313 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 APOBEC3DQ96AK3 386 aaPredicted RBP18.38■□□□□ 0.53
VPS28-212ENST00000530836 NOX3Q9HBY0 568 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 ZNF629Q9UEG4 869 aaPredicted RBP18.38■□□□□ 0.53
VPS28-212ENST00000530836 PCNX1Q96RV3 2341 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 FABP12A6NFH5 140 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 J3QW42 95 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 SLC17A2O00624 439 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 ALX3O95076 343 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 APOA1P02647 267 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 HES5Q5TA89 166 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 MDP1Q86V88 176 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 LILRB4Q8NHJ6 448 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 SPSB4Q96A44 273 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 OPN3Q9H1Y3 402 aaPredicted RBP18.38■□□□□ 0.53
VPS28-212ENST00000530836 OPA3Q9H6K4 179 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 LIN7BQ9HAP6 207 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 CYSLTR2Q9NS75 346 aa18.38■□□□□ 0.53
VPS28-212ENST00000530836 FAM25AB3EWG3 89 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 FAM25CB3EWG5 89 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 FAM25GB3EWG6 89 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 MSTNO14793 375 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 SULT1B1O43704 296 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 LMX1BO60663 402 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 MALLQ13021 153 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 FAM131AQ6UXB0 335 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 UTS2BQ765I0 119 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 LIX1LQ8IVB5 337 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 ZNF584Q8IVC4 421 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 SEMA6DQ8NFY4 1073 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 ZNF75AQ96N20 296 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 CCDC32Q9BV29 185 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 RABL2AQ9UBK7 228 aaPredicted RBP18.37■□□□□ 0.53
VPS28-212ENST00000530836 RABL2BQ9UNT1 228 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 V9GYH0 126 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 DOPEY1Q5JWR5 2465 aa18.37■□□□□ 0.53
VPS28-212ENST00000530836 MAGEB3O15480 346 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 PAHP00439 452 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 SNRPBP14678 240 aaKnown RBP18.36■□□□□ 0.53
VPS28-212ENST00000530836 CBR1P16152 277 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 MAP2K3P46734 347 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 CDSNQ15517 529 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 TBC1D28Q2M2D7 210 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 UBE2NLQ5JXB2 153 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 CNIH2Q6PI25 160 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 CXorf67Q86X51 503 aaPredicted RBP18.36■□□□□ 0.53
VPS28-212ENST00000530836 DNAAF1Q8NEP3 725 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 OR6M1Q8NGM8 313 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 CA5BP1Q8WTZ4 195 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 SORCS2Q96PQ0 1159 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 UQCC2Q9BRT2 126 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 AMDHD2Q9Y303 409 aa18.36■□□□□ 0.53
VPS28-212ENST00000530836 C5orf63A6NC05 138 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 ALDOBP05062 364 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 ZNF14P17017 642 aaPredicted RBP18.35■□□□□ 0.53
VPS28-212ENST00000530836 ELK1P19419 428 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 CCNOP22674 350 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 ANOS1P23352 680 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 SPOCK1Q08629 439 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 RIPPLY1Q0D2K3 151 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 RAB11BQ15907 218 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 ZNF181Q2M3W8 571 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 GLYATL3Q5SZD4 288 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 ZBTB37Q5TC79 503 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 BHLHA15Q7RTS1 189 aaPredicted RBP18.35■□□□□ 0.53
VPS28-212ENST00000530836 FAM169BQ8N8A8 192 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 SLC30A7Q8NEW0 376 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 NEK6Q9HC98 313 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 PIGLQ9Y2B2 252 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 COL12A1Q99715 3063 aa18.35■□□□□ 0.53
VPS28-212ENST00000530836 BMP5P22003 454 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 C1orf100Q5SVJ3 147 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 FAM166AQ6J272 317 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 BAIAP2L2Q6UXY1 529 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 GDPD1Q8N9F7 314 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 OR51A2Q8NGJ7 313 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 OR5L1Q8NGL2 311 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 OR13C9Q8NGT0 318 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms