RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 SGK3Q96BR1 496 aa11.27□□□□□ -0.61
CPNE3-205ENST00000522240 FAM71F1Q96KD3 344 aaPredicted RBP11.27□□□□□ -0.61
CPNE3-205ENST00000522240 C1QTNF6Q9BXI9 259 aa11.27□□□□□ -0.61
CPNE3-205ENST00000522240 BCL2L14Q9BZR8 327 aa11.27□□□□□ -0.61
CPNE3-205ENST00000522240 DCSTAMPQ9H295 470 aa11.27□□□□□ -0.61
CPNE3-205ENST00000522240 RNF167Q9H6Y7 350 aa11.27□□□□□ -0.61
CPNE3-205ENST00000522240 NOX4Q9NPH5 578 aa11.27□□□□□ -0.61
CPNE3-205ENST00000522240 ZNF275Q9NSD4 429 aaPredicted RBP11.27□□□□□ -0.61
CPNE3-205ENST00000522240 NDRG3Q9UGV2 375 aa11.27□□□□□ -0.61
CPNE3-205ENST00000522240 ICE1Q9Y2F5 2266 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 NBPF19A0A087WUL8 3843 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 PIN1P1O15428 100 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 CRYAAP02489 173 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 CD40P25942 277 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 CALCRP30988 508 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 THBS4P35443 961 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 TGFBR1P36897 503 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 RAD52P43351 418 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 SERPINB10P48595 397 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 PPP1CBP62140 327 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 ZNF92Q03936 586 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 FAM27D1Q5T7N8 215 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 ZBTB37Q5TC79 503 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 FBXW12Q6X9E4 464 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 C22orf34Q6ZV56 151 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 MRPL21Q7Z2W9 205 aaKnown RBP11.26□□□□□ -0.61
CPNE3-205ENST00000522240 WFDC8Q8IUA0 241 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 ITPKCQ96DU7 683 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 WFIKKN1Q96NZ8 548 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 SLITRK2Q9H156 845 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 PLEKHA1Q9HB21 404 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 FOXJ3Q9UPW0 622 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 STARD10Q9Y365 291 aa11.26□□□□□ -0.61
CPNE3-205ENST00000522240 A0A1W2PPW3 197 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 NGFP01138 241 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 ZNF20P17024 532 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 IGFBP3P17936 291 aaPredicted RBP11.25□□□□□ -0.61
CPNE3-205ENST00000522240 GRNP28799 593 aaKnown RBP11.25□□□□□ -0.61
CPNE3-205ENST00000522240 MAP2K3P46734 347 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 GSK3AP49840 483 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 UCP2P55851 309 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 RPS23P62266 143 aaKnown RBP11.25□□□□□ -0.61
CPNE3-205ENST00000522240 FAM3AP98173 230 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 GK2Q14410 553 aaPredicted RBP11.25□□□□□ -0.61
CPNE3-205ENST00000522240 CNPY1Q3B7I2 92 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 PGAP1Q75T13 922 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 TPRA1Q86W33 373 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 SEMA6DQ8NFY4 1073 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 DYNC2LI1Q8TCX1 351 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 PP6455Q8WZ26 134 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 PSMG3-AS1Q96PY0 264 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 PPIL3Q9H2H8 161 aaKnown RBP11.25□□□□□ -0.61
CPNE3-205ENST00000522240 TCF7L1Q9HCS4 588 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 SNTG1Q9NSN8 517 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 PTTG3PQ9NZH4 202 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 PTTG2Q9NZH5 202 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 CCDC59Q9P031 241 aaKnown RBP11.25□□□□□ -0.61
CPNE3-205ENST00000522240 CKLFQ9UBR5 152 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 SPEF1Q9Y4P9 236 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 HCFC1P51610 2035 aa11.25□□□□□ -0.61
CPNE3-205ENST00000522240 DIDO1Q9BTC0 2240 aaKnown RBP11.24□□□□□ -0.61
CPNE3-205ENST00000522240 SHISA3A0PJX4 238 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 H3BSH0 61 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 PDCD5O14737 125 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 CASKO14936 926 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 CDRT1O95170 752 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 FAM157BP0CG42 384 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 RAC2P15153 192 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 SDC2P34741 201 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 DDOSTP39656 456 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 MAGEB1P43366 347 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 NKX6-1P78426 367 aaPredicted RBP11.24□□□□□ -0.61
CPNE3-205ENST00000522240 ZNF529Q6P280 563 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 UTS2BQ765I0 119 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 KRT74Q7RTS7 529 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 SERPINA12Q8IW75 414 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 CSNK2A3Q8NEV1 391 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 NUP37Q8NFH4 326 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 OR1J1Q8NGS3 322 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 FGGYQ96C11 551 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 ADAT3Q96EY9 351 aaPredicted RBP11.24□□□□□ -0.61
CPNE3-205ENST00000522240 ZC3HAV1LQ96H79 300 aaKnown RBP11.24□□□□□ -0.61
CPNE3-205ENST00000522240 DACH2Q96NX9 599 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 SOX7Q9BT81 388 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 CHST5Q9GZS9 411 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 POFUT1Q9H488 388 aa11.24□□□□□ -0.61
CPNE3-205ENST00000522240 TRAV8-7A0A075B6U6 113 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 ZNF816-ZNF321PA0A0X1KG74 233 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 A0A1W2PPK0 400 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 TUBAL3A6NHL2 446 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 J3QL48 77 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 LMX1BO60663 402 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 ALX3O95076 343 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 SELEP16581 610 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 SRMP19623 302 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 ACKR3P25106 362 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 GNALP38405 381 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 PPP3R1P63098 170 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 RIPPLY1Q0D2K3 151 aa11.23□□□□□ -0.61
CPNE3-205ENST00000522240 SNTB2Q13425 540 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms