RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 EREGO14944 169 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 MRPL33O75394 65 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 LALBAP00709 142 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 GABRA1P14867 456 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 TNFSF4P23510 183 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 PRPH2P23942 346 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 APEX1P27695 318 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 GP2P55259 537 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 CLDN18P56856 261 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 LCN6P62502 163 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 KIAA0141Q14154 515 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 SFRP5Q5T4F7 317 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 NIPAL3Q6P499 406 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 SHFQ7M4L6 423 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 RNF113BQ8IZP6 322 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF808Q8N4W9 903 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 OR6T1Q8NGN1 323 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 KTI12Q96EK9 354 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 OR51E2Q9H255 320 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 SLCO5A1Q9H2Y9 848 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A1B0GW15 77 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 GUSBP08236 651 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 RBMXP38159 391 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 KIR3DL2P43630 455 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 CAMLGP49069 296 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 DLX5P56178 289 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 S100A10P60903 97 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 POU3F1Q03052 451 aaPredicted RBP6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 P2RY14Q15391 338 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 ALKBH6Q3KRA9 238 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 TMEM211Q6ICI0 200 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 RPUSD3Q6P087 351 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 SMARCD3Q6STE5 483 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 C22orf34Q6ZV56 151 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 PGAM4Q8N0Y7 254 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 LINC00471Q8N535 108 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 C11orf42Q8N5U0 333 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 OR10K1Q8NGX5 313 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 OR6N1Q8NGY5 312 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 TBX5Q99593 518 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 HOPXQ9BPY8 73 aaPredicted RBP6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 SLIRPQ9GZT3 109 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 CBLN4Q9NTU7 201 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 TBC1D24Q9ULP9 559 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 SLC7A7Q9UM01 511 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 FZR1Q9UM11 496 aa6.96□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A087WZY1 265 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 MCIDASD6RGH6 385 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 M0R143 59 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 WDR1O75083 606 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 GPIP06744 558 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PPP3CBP16298 524 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 RPL4P36578 427 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PRSS12P56730 875 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 CLDN17P56750 224 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PKIAP61925 76 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 CD47Q08722 323 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 GUCA2BQ16661 112 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 ACTBL2Q562R1 376 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 TCTE3Q8IZS6 198 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC24A4Q8NFF2 622 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 NEUROG1Q92886 237 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 RAB24Q969Q5 203 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PERPQ96FX8 193 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 FCRL1Q96LA6 429 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 MRGPRX4Q96LA9 322 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 SEC61A2Q9H9S3 476 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PLCXD1Q9NUJ7 323 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 DNAJB12Q9NXW2 375 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 OPN4Q9UHM6 478 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 LAMP3Q9UQV4 416 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 A0A1B0GWA3 101 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 FAM171A2A8MVW0 826 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PLAUP00749 431 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 IFNA21P01568 189 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 DBIP07108 87 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 CSF3P09919 207 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 GPR4P46093 362 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 RORCP51449 518 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 BTG1P62324 171 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 CHRNB3Q05901 458 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 TNK1Q13470 666 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC22A6Q4U2R8 563 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PRAMEF5Q5TYX0 476 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 PRAMEF6Q5VXH4 476 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 LEMD1Q68G75 181 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 MTFR2Q6P444 385 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 CLDN22Q8N7P3 220 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 BVESQ8NE79 360 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 OR14K1Q8NGZ2 314 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 CORO2AQ92828 525 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF385AQ96PM9 386 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 STACQ99469 402 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF350Q9GZX5 532 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 OR10A4Q9H209 315 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 NPDC1Q9NQX5 325 aaPredicted RBP6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 KCNG2Q9UJ96 466 aa6.96□□□□□ -1.3
LIMCH1-219ENST00000514096 LOC100509620A0A075B734 347 aa6.95□□□□□ -1.3
LIMCH1-219ENST00000514096 M0R082 166 aa6.95□□□□□ -1.3
LIMCH1-219ENST00000514096 MAGEB4O15481 346 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms