RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ECH1Q13011 328 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 PDSS1Q5T2R2 415 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 LINC00696Q6ZRV3 163 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 OR10R2Q8NGX6 335 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 NICN1Q9BSH3 213 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 LPAR5Q9H1C0 372 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 CA10Q9NS85 328 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 G3V3Q6 166 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 ITGB2P05107 769 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF735P0CB33 412 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 B4GALT1P15291 398 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 LHX2P50458 406 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 RIPPLY2Q5TAB7 128 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 TRAPPC6BQ86SZ2 158 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF584Q8IVC4 421 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 TMEM104Q8NE00 496 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 A0A0A6YYD4 124 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 AMY2AP04746 511 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 DNASE1P24855 282 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 SNAI3Q3KNW1 292 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF774Q6NX45 483 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 CRIP3Q6Q6R5 217 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 RTN4RL2Q86UN3 420 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 GRPEL2Q8TAA5 225 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 IP6K3Q96PC2 410 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 TTTY12Q9BZ98 90 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 EXO5Q9H790 373 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF224Q9NZL3 707 aa18.48■□□□□ 0.55
CCDC88B-208ENST00000492980 GALR2O43603 387 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 CDC14BO60729 498 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 GNB3P16520 340 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 FAHP16930 419 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 TRIP6Q15654 476 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 RSPO4Q2I0M5 234 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 CEACAM16Q2WEN9 425 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 IDO2Q6ZQW0 420 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 OR2T35Q8NGX2 323 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 KCNG3Q8TAE7 436 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 NUDCD2Q8WVJ2 157 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 TMEM45BQ96B21 275 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 GPER1Q99527 375 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 FOXB1Q99853 325 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 SELENOIQ9C0D9 397 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 OR10A2Q9H208 303 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 GPR35Q9HC97 309 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 FAM166BA8MTA8 275 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 MPIG6BO95866 241 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 CHRM2P08172 466 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF32P17041 273 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 CLDN18P56856 261 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 SCRN3Q0VDG4 424 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 UBE2V2Q15819 145 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 DMRTC1Q5HYR2 192 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 SFRP5Q5T4F7 317 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 DRAM2Q6UX65 266 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 CHMP1BQ7LBR1 199 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 CCDC54Q8NEL0 328 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 OR4S1Q8NGB4 309 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 OR1F12Q8NHA8 337 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 PP6455Q8WZ26 134 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 GPR137Q96N19 417 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 CHST5Q9GZS9 411 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 PIPOXQ9P0Z9 390 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 PIGLQ9Y2B2 252 aa18.47■□□□□ 0.55
CCDC88B-208ENST00000492980 UBBP0CG47 229 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 MAGEA5P43359 124 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 HGFACQ04756 655 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 SUMF1Q8NBK3 374 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 OR52H1Q8NGJ2 320 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 LILRB4Q8NHJ6 448 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 SGK3Q96BR1 496 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 CHST6Q9GZX3 395 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 UPB1Q9UBR1 384 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 IGKV3D-15A0A087WSY6 115 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 A0A1W2PP11 408 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 OR6C6A6NF89 314 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 ALX3O95076 343 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 PATE4P0C8F1 98 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 HOXD11P31277 338 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 KISS1Q15726 138 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 KRTAP27-1Q3LI81 207 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 BPIFB2Q8N4F0 458 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 IL22RA1Q8N6P7 574 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 GVQW1Q8N7I0 195 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 NPRL2Q8WTW4 380 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 C10orf35Q96D05 121 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 SLC6A7Q99884 636 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 SLC25A21Q9BQT8 299 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 TMEM59Q9BXS4 323 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 CHIAQ9BZP6 476 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 SLC6A15Q9H2J7 730 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 BANF2Q9H503 90 aa18.46■□□□□ 0.55
CCDC88B-208ENST00000492980 UBE2QL1A1L167 161 aa18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 SSX5O60225 188 aa18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 MTRF1O75570 445 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 GIPP09681 153 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 SRYQ05066 204 aa18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 TMEM251Q8N6I4 163 aa18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 AKR7LQ8NHP1 331 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms