RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SPIN3Q5JUX0 258 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 METTL11BQ5VVY1 283 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 WDR5BQ86VZ2 330 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 GPHA2Q96T91 129 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF436Q9C0F3 470 aaPredicted RBP12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 EVA1AQ9H8M9 152 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 EHFQ9NZC4 300 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 LAMA5O15230 3695 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 C5orf49A4QMS7 147 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 NKX2-8O15522 239 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 ACHEP22303 614 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 DSCR4P56555 118 aaPredicted RBP12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 TUSC5Q8IXB3 177 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 GJC3Q8NFK1 279 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 STEAP2Q8NFT2 490 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 OR2M2Q96R28 347 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 ESRP2Q9H6T0 727 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 A0A1W2PPC1 479 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 MEGF11A6BM72 1044 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 TOX3O15405 576 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 FGF5P12034 268 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 Q0VFX4 171 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 RBMS2Q15434 407 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 SNAI3Q3KNW1 292 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 CHRFAM7AQ494W8 412 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 DCAF12L2Q5VW00 463 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 UNQ6126/PRO20091Q6UXV3 157 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 LILRB4Q8NHJ6 448 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 SNX18Q96RF0 628 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 SMIM3Q9BZL3 60 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 G6PC2Q9NQR9 355 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 CSAG2Q9Y5P2 127 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 E9PLN8 166 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 TNFSF12O43508 249 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 PGA4P0DJD7 388 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 PGA3P0DJD8 388 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 VSIG10L2P0DP72 767 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 VSIG8P0DPA2 414 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 PTGDSP41222 190 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ACTBP60709 375 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ACTG1P63261 375 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ELP2Q6IA86 826 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ANKRD16Q6P6B7 361 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 C5orf24Q7Z6I8 188 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 LIX1LQ8IVB5 337 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ST8SIA4Q92187 359 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 PNPLA2Q96AD5 504 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 LRFN5Q96NI6 719 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 PARP12Q9H0J9 701 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ZGRF1Q86YA3 2104 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 TRAV39A0A0B4J263 110 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ZSCAN5BA6NJL1 495 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ZIC3O60481 467 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF780AO75290 641 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 C1QBP02746 253 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 RAF1P04049 648 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 CREB3L2Q70SY1 520 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 BIVMQ86UB2 503 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 SLC43A2Q8N370 569 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 RNF133Q8WVZ7 376 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 SPTSSAQ969W0 71 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 CYB5R1Q9UHQ9 305 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 FZR1Q9UM11 496 aa12.11□□□□□ -0.47
CCDC88A-211ENST00000471947 WNK2Q9Y3S1 2297 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 CSF1P09603 554 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 HLXQ14774 488 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 NAXDQ8IW45 347 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 CACNA1AO00555 2505 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 DISC1C4P0D8 188 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 AKR1C2P52895 323 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 SEC61A1P61619 476 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 MC2RQ01718 297 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 AKR1C1Q04828 323 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 PCK2Q16822 640 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 UNQ9370/PRO34162Q6UXP9 181 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 C12orf45Q8N5I9 185 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 ZBTB8AQ96BR9 441 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 SEH1LQ96EE3 360 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 URM1Q9BTM9 101 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 ZCCHC4Q9H5U6 513 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 HDGFL3Q9Y3E1 203 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 TRBV5-5A0A0J9YX44 114 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 C9orf172C9J069 976 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 AQP8O94778 261 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 S100A1P23297 94 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 TAS2R19P59542 299 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 PPIAP62937 165 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 SP6Q3SY56 376 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 PHLDA2Q53GA4 152 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF684Q5T5D7 378 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 TSPO2Q5TGU0 170 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 OR5H2Q8NGV7 314 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 SOSTQ9BQB4 213 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 TMEM9BQ9NQ34 198 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 PRMT8Q9NR22 394 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF581Q9P0T4 197 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 CFAP47Q6ZTR5 3102 aa12.1□□□□□ -0.47
CCDC88A-211ENST00000471947 DMXL1Q9Y485 3027 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 F5H5P2 479 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 H7C417 338 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms