RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SCRT1Q9BWW7 348 aa10.4□□□□□ -0.74
CPSF3-202ENST00000460593 HEBP2Q9Y5Z4 205 aa10.4□□□□□ -0.74
CPSF3-202ENST00000460593 PRR19A6NJB7 356 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 TXNDC12O95881 172 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 CXCL1P09341 107 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 PAX6P26367 422 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 S100A2P29034 98 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 CAMLGP49069 296 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF84P51523 738 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 TOMM20Q15388 145 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 PCK2Q16822 640 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 PHF19Q5T6S3 580 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 HIST2H3AQ71DI3 136 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 SLC26A10Q8NG04 563 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 GTF3AQ92664 365 aaKnown RBP10.4□□□□□ -0.75
CPSF3-202ENST00000460593 GNRHR2Q96P88 292 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 OR5B2Q96R09 309 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 OR2M4Q96R27 311 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 ADOQ96SZ5 270 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 WFDC1Q9HC57 220 aa10.4□□□□□ -0.75
CPSF3-202ENST00000460593 A0A0A6YYH2 397 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 A6NJ64 397 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 HCRTR2O43614 444 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 DIRAS3O95661 229 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 SERPINA2P20848 420 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 RAB5CP51148 216 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF124Q15973 351 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 C4orf17Q53FE4 359 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF542PQ5EBM4 170 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 C1orf100Q5SVJ3 147 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF529Q6P280 563 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 FAHD2BQ6P2I3 314 aaPredicted RBP10.39□□□□□ -0.75
CPSF3-202ENST00000460593 FDX2Q6P4F2 183 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 OR52N5Q8NH56 324 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 NPRL2Q8WTW4 380 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 RAB7BQ96AH8 199 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 FAHD2AQ96GK7 314 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 ARHGAP5-AS1Q96IT6 56 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 OR10A5Q9H207 317 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 RAB18Q9NP72 206 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 UFSP2Q9NUQ7 469 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 IGLV1-36A0A0B4J1U3 117 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 MASP2O00187 686 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF264O43296 627 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 CST4P01036 141 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 HOXA5P20719 270 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 MDKP21741 143 aaPredicted RBP10.39□□□□□ -0.75
CPSF3-202ENST00000460593 THBS4P35443 961 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 OR3A4PP47883 348 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 ARFRP1Q13795 201 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 SP6Q3SY56 376 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 COMMD2Q86X83 199 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 OR56B1Q8NGI3 324 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 REEP6Q96HR9 211 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 ABHD14AQ9BUJ0 271 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 G6PC3Q9BUM1 346 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 CHST5Q9GZS9 411 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 STARD10Q9Y365 291 aa10.39□□□□□ -0.75
CPSF3-202ENST00000460593 IFNA17P01571 189 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 SOD3P08294 240 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 CSF2RAP15509 400 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 CXCR1P25024 350 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 TMEM50BP56557 158 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 EIF5AL1Q6IS14 154 aaKnown RBP10.38□□□□□ -0.75
CPSF3-202ENST00000460593 KCTD18Q6PI47 426 aaPredicted RBP10.38□□□□□ -0.75
CPSF3-202ENST00000460593 GLIPR1L1Q6UWM5 242 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 LYPD6Q86Y78 171 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 UBAC2Q8NBM4 344 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 SGK3Q96BR1 496 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 KCNJ16Q9NPI9 418 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 GAR1Q9NY12 217 aaKnown RBP10.38□□□□□ -0.75
CPSF3-202ENST00000460593 R4GMQ9 66 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 TGIF2-C20orf24A0A0A6YYL0 155 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 HOXC4P09017 264 aaPredicted RBP10.38□□□□□ -0.75
CPSF3-202ENST00000460593 RNH1P13489 461 aaKnown RBP10.38□□□□□ -0.75
CPSF3-202ENST00000460593 FSTP19883 344 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 AMY2BP19961 511 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 PTGER4P35408 488 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 DHPSP49366 369 aaPredicted RBP10.38□□□□□ -0.75
CPSF3-202ENST00000460593 RAP1AP62834 184 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 CCL20P78556 96 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 QRFPP83859 136 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 TFF2Q03403 129 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 RSU1Q15404 277 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 C14orf28Q4W4Y0 310 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 AADACL3Q5VUY0 350 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 MRPL24Q96A35 216 aaKnown RBP10.38□□□□□ -0.75
CPSF3-202ENST00000460593 EHFQ9NZC4 300 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 HDGFL3Q9Y3E1 203 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 HS3ST3B1Q9Y662 390 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 CD37P11049 281 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 PNMTP11086 282 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 CASP6P55212 293 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 RAB38P57729 211 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 TAS2R31P59538 309 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 CNKSR3Q6P9H4 555 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 HEPN1Q6WQI6 88 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 TMEM156Q8N614 296 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 AVL9Q8NBF6 648 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 OR5H2Q8NGV7 314 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms