RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 HCKP08631 526 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 OCM2P0CE71 109 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 OCMP0CE72 109 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 CXCR2P25025 360 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 GGT2P36268 569 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ACVR1BP36896 505 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 IDH2P48735 452 aaKnown RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 EFNB2P52799 333 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ATP1B3P54709 279 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 DSTNP60981 165 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 CXCR4P61073 352 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 NCS1P62166 190 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 SLC35A2P78381 396 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 OC90Q02509 493 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 PUDPQ08623 228 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ST3GAL3Q11203 375 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 RAB40BQ12829 278 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ZNF154Q13106 437 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 FADDQ13158 208 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 DGCR6Q14129 220 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 LAGE3Q14657 143 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 DGUOKQ16854 277 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ZNF630Q2M218 657 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 C6orf226Q5I0X4 101 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 FAM120AOSQ5T036 256 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 SYT6Q5T7P8 510 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 CARD17Q5XLA6 110 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 FAM71E1Q6IPT2 247 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 FAHD1Q6P587 224 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 TMIGD1Q6UXZ0 262 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 P2RY8Q86VZ1 359 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ZNF547Q8IVP9 402 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 SLC30A8Q8IWU4 369 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ENTHD1Q8IYW4 607 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 KIR3DL3Q8N743 410 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 DRAXINQ8NBI3 349 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 ZNF740Q8NDX6 193 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 OR5L2Q8NGL0 311 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 OR5AR1Q8NGP9 310 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 NDNFQ8TB73 568 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 PHOSPHO2Q8TCD6 241 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 SETD7Q8WTS6 366 aaKnown RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 APH1BQ8WW43 257 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 OR5P2Q8WZ92 322 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 TFGQ92734 400 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 TAMM41Q96BW9 452 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 PLEKHA8Q96JA3 519 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ZNF514Q96K75 400 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 NRTNQ99748 197 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ATF6BQ99941 703 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 NIPSNAP1Q9BPW8 284 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 AIF1LQ9BQI0 150 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 GABARAPL3Q9BY60 117 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 OR52A5Q9H2C5 316 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 EHD1Q9H4M9 534 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 DUSP21Q9H596 190 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 TMEM38AQ9H6F2 299 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 CCNB1IP1Q9NPC3 277 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ACOT13Q9NPJ3 140 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 PRSS16Q9NQE7 514 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 EXOSC3Q9NQT5 275 aaKnown RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 FAIMQ9NVQ4 179 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 TAS2R9Q9NYW1 312 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 SIGLEC8Q9NYZ4 499 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 SLC23A2Q9UGH3 650 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 RAB23Q9ULC3 237 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 POFUT2Q9Y2G5 429 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 NTNG1Q9Y2I2 539 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 FAM32AQ9Y421 112 aaKnown RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 GMEB1Q9Y692 573 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 MICAL3Q7RTP6 2002 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 ZNF106Q9H2Y7 1883 aaKnown RBP3.28□□□□□ -1.88
VPS29-202ENST00000447578 LTBP2Q14767 1821 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 IGHV3OR16-12A0A075B7B8 117 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 IGHV2-70DA0A0C4DH43 119 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 A0A0G2JN53 185 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 SAGE2PA6NJ88 616 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 FOXI3A8MTJ6 420 aaPredicted RBP3.28□□□□□ -1.88
VPS29-202ENST00000447578 EFCAB9A8MZ26 197 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 CLDN25C9JDP6 229 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 E9PQ18 207 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 C5orf67F2Z3F1 127 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 M0R3G1 203 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 PLPP1O14494 284 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 SLC22A1O15245 554 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 LRRTM2O43300 516 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 SEMA3DO95025 777 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 GADD45GO95257 159 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 SEMA4FO95754 770 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 STATHP02808 62 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 RPN2P04844 631 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 SERPIND1P05546 499 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 BCHEP06276 602 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 CDK1P06493 297 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 ANXA8P13928 327 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 CD36P16671 472 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 SERPINA2P20848 420 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 PSMB5P28074 263 aa3.28□□□□□ -1.88
VPS29-202ENST00000447578 HSD17B2P37059 387 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 411.3 ms