RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 KCNRGQ8N5I3 272 aa14.1□□□□□ -0.15
SHQ1-202ENST00000444040 PPP1R1CQ8WVI7 109 aa14.1□□□□□ -0.15
SHQ1-202ENST00000444040 ZNF385AQ96PM9 386 aaKnown RBP14.1□□□□□ -0.15
SHQ1-202ENST00000444040 PDCD10Q9BUL8 212 aa14.1□□□□□ -0.15
SHQ1-202ENST00000444040 TMEM59Q9BXS4 323 aa14.1□□□□□ -0.15
SHQ1-202ENST00000444040 WDR13Q9H1Z4 485 aa14.1□□□□□ -0.15
SHQ1-202ENST00000444040 SH2D2AQ9NP31 389 aa14.1□□□□□ -0.15
SHQ1-202ENST00000444040 PTRH2Q9Y3E5 179 aaKnown RBP14.1□□□□□ -0.15
SHQ1-202ENST00000444040 HS3ST3B1Q9Y662 390 aa14.1□□□□□ -0.15
SHQ1-202ENST00000444040 A8MXK9 166 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 RAD51DO75771 328 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 NR2C1P13056 603 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 LIFP15018 202 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 MSR1P21757 451 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 AVPR2P30518 371 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 CSNK1A1P48729 337 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 EXT1Q16394 746 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 MICBQ29980 383 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 JMJD6Q6NYC1 403 aaPredicted RBP14.09□□□□□ -0.15
SHQ1-202ENST00000444040 DTX1Q86Y01 620 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 FBXW5Q969U6 566 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 NABP1Q96AH0 204 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 NELFAQ9H3P2 528 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 CFAP54Q96N23 3096 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 TNRC6BQ9UPQ9 1833 aaKnown RBP14.09□□□□□ -0.15
SHQ1-202ENST00000444040 EML6Q6ZMW3 1958 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 D6RAR5 112 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 IFNA6P05013 189 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 KLK3P07288 261 aaPredicted RBP14.09□□□□□ -0.15
SHQ1-202ENST00000444040 CCL4P13236 92 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 GLRX5Q86SX6 157 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 SLC38A6Q8IZM9 456 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 PAQR8Q8TEZ7 354 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 ST8SIA2Q92186 375 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 MR1Q95460 341 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 PHB2Q99623 299 aa14.09□□□□□ -0.15
SHQ1-202ENST00000444040 IGHV3-15A0A0B4J1V0 119 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 RNF222A6NCQ9 220 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 MFNGO00587 321 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 NTN3O00634 580 aaPredicted RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 PRF1P14222 555 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 ATP1B3P54709 279 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 DSCR4P56555 118 aaPredicted RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 RSPO1Q2MKA7 263 aaPredicted RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 LRRC37A5PQ49AS3 106 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 DMRTC1Q5HYR2 192 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 VAX1Q5SQQ9 334 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 TMEM123Q8N131 208 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 M1APQ8TC57 530 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 UCN2Q96RP3 112 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 DBX1A6NMT0 343 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 EIF1BO60739 113 aaKnown RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 OR2F2O95006 317 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 DUS4LO95620 317 aaKnown RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 HPP00738 406 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 FGF2P09038 288 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 UBBP0CG47 229 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 RPS27AP62979 156 aaKnown RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 UBA52P62987 128 aaKnown RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 HIST1H3AP68431 136 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 OR2F1Q13607 317 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 HIST2H3PS2Q5TEC6 136 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 HIST2H3AQ71DI3 136 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 PDZD9Q8IXQ8 264 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 FAM89BQ8N5H3 189 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 GJC3Q8NFK1 279 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 MARCH1Q8TCQ1 289 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 LIN37Q96GY3 246 aaPredicted RBP14.08□□□□□ -0.16
SHQ1-202ENST00000444040 PGAM5Q96HS1 289 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 COMMD9Q9P000 198 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 PFDN2Q9UHV9 154 aa14.08□□□□□ -0.16
SHQ1-202ENST00000444040 CRTAPO75718 401 aaPredicted RBP14.07□□□□□ -0.16
SHQ1-202ENST00000444040 VAMP5O95183 116 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 AKR1C4P17516 323 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 ECH1Q13011 328 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 BAMBIQ13145 260 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 PNLIPRP3Q17RR3 467 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 RAET1LQ5VY80 246 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 C1QL2Q7Z5L3 287 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 OR56B1Q8NGI3 324 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 TERB2Q8NHR7 220 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 ARHGAP5-AS1Q96IT6 56 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 ZC3H10Q96K80 434 aaKnown RBP14.07□□□□□ -0.16
SHQ1-202ENST00000444040 GPER1Q99527 375 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 OCSTAMPQ9BR26 566 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 ZNF160Q9HCG1 818 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 OR5H15A6NDH6 313 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 CEACAM18A8MTB9 384 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 G3V3Y1 287 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 TNRC18O15417 2968 aaPredicted RBP14.07□□□□□ -0.16
SHQ1-202ENST00000444040 YKT6O15498 198 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 WDPCPO95876 746 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 CFIP05156 583 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 VAMP1P23763 118 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 OTX1P32242 354 aaPredicted RBP14.07□□□□□ -0.16
SHQ1-202ENST00000444040 ALDH3B1P43353 468 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 SSR4P51571 173 aa14.07□□□□□ -0.16
SHQ1-202ENST00000444040 ZFP36L1Q07352 338 aaKnown RBP14.07□□□□□ -0.16
SHQ1-202ENST00000444040 EIF3IQ13347 325 aaKnown RBP14.07□□□□□ -0.16
SHQ1-202ENST00000444040 KISS1Q15726 138 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms