RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TMEM30BQ3MIR4 351 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 NHLRC1Q6VVB1 395 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 KMT5CQ86Y97 462 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 Q8N9G6 341 aaPredicted RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 OBP2AQ9NY56 170 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 VAX2Q9UIW0 290 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 SMCHD1A6NHR9 2005 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 ANKRD36A6QL64 1941 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR2M5A3KFT3 312 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 MRPL33O75394 65 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 OPN1LWP04000 364 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR5G3P0C626 314 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 TNFRSF4P43489 277 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR5I1Q13606 314 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 BSXQ3C1V8 233 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 C1QTNF12Q5T7M4 302 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 TIMM10BQ9Y5J6 103 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 IGSF23A1L1A6 192 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 RBFOX3A6NFN3 312 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 F3P13726 295 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 SMPD1P17405 629 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 FOLR3P41439 243 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 ARRDC2Q8TBH0 407 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 FAM71F1Q96KD3 344 aaPredicted RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 SMIM3Q9BZL3 60 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 NOSIPQ9Y314 301 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 CHST2Q9Y4C5 530 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 URGCP-MRPS24S4R325 110 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 HCRTO43612 131 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 NTF3P20783 257 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 CST6Q15828 149 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 DYRK2Q92630 601 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 RAB37Q96AX2 223 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 MAGT1Q9H0U3 335 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 KLF8O95600 359 aaPredicted RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 C8orf89P0DMQ9 161 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 CD68P34810 354 aaPredicted RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR5AS1Q8N127 324 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 WDTC1Q8N5D0 677 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 CYB561A3Q8NBI2 242 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR8D4Q8NGM9 314 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 IL1F10Q8WWZ1 152 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 COCHO43405 550 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 GPX5O75715 221 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 FABP4P15090 132 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 GLIPR1L1Q6UWM5 242 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 ZNF480Q8WV37 535 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 IGSF21Q96ID5 467 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 HDAC8Q9BY41 377 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 PRAMEF4O60810 478 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 OR3A1P47881 315 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 RIGQ13278 110 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 TBC1D28Q2M2D7 210 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 C9orf131Q5VYM1 1079 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 FAM71E1Q6IPT2 247 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 SUSD1Q6UWL2 747 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 FOXN4Q96NZ1 517 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 PHIPQ8WWQ0 1821 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 MBTPS2O43462 519 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 KLF7O75840 302 aaPredicted RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 LIPCP11150 499 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 SNU13P55769 128 aaKnown RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 PMS2P11Q13670 270 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 PLPP4Q5VZY2 271 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 GLIS2Q9BZE0 524 aaPredicted RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 SMG9Q9H0W8 520 aaKnown RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 CRHP06850 196 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 HIST1H1EP10412 219 aaKnown RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 SULT1A1P50225 295 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 RPS26P62854 115 aaKnown RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 GPM6BQ13491 265 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 TESK1Q15569 626 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 ORAI1Q96D31 301 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 POM121L2Q96KW2 1035 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 ARSDP51689 593 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 FUT6P51993 359 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 GPNMBQ14956 572 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 C18orf21Q32NC0 220 aaPredicted RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 NPWQ8N729 165 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 OR52N4Q8NGI2 321 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 SFRP2Q96HF1 295 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 MRGPRX4Q96LA9 322 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 NARFLQ9H6Q4 476 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 OSGIN2Q9Y236 505 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 CUL9Q8IWT3 2517 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 H0YIG0 161 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 CFDP00746 253 aaPredicted RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 TIMP2P16035 220 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 CST5P28325 142 aaPredicted RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 AMMECR1LQ6DCA0 310 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 TMEM183AQ8IXX5 376 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 WDR89Q96FK6 387 aaPredicted RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 MFRPQ9BY79 579 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 SH2D2AQ9NP31 389 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 USP22Q9UPT9 525 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 PTRH2Q9Y3E5 179 aaKnown RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 SLC5A10A0PJK1 596 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 B4DGG1 531 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 MPC2O95563 127 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 GABRA1P14867 456 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms