RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 MRGPRX4Q96LA9 322 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 DDA1Q9BW61 102 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 SELENOIQ9C0D9 397 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 RAB22AQ9UL26 194 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 URB1O60287 2271 aaKnown RBP9.44□□□□□ -0.9
CUX1-205ENST00000425244 hCG_1807616A0A1W2PRN6 198 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 WIPF3A6NGB9 483 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 DISC1C4P0D8 188 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 RAB27BO00194 218 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 RER1O15258 196 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 COX6A1P12074 109 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 ABOP16442 354 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 RAB3AP20336 220 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 CD34P28906 385 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 ARHGDIBP52566 201 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 EIF3IQ13347 325 aaKnown RBP9.44□□□□□ -0.9
CUX1-205ENST00000425244 ZMYND11Q15326 602 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 C3orf33Q6P1S2 294 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 ANGPTL5Q86XS5 388 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 SLC22A24Q8N4F4 322 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 OR5D14Q8NGL3 314 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 OR13C8Q8NGS7 320 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 FOXRED1Q96CU9 486 aaPredicted RBP9.44□□□□□ -0.9
CUX1-205ENST00000425244 SLCO5A1Q9H2Y9 848 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 IFT46Q9NQC8 304 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 KIF25Q9UIL4 384 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 KLF2Q9Y5W3 355 aaPredicted RBP9.44□□□□□ -0.9
CUX1-205ENST00000425244 LHFPL6Q9Y693 200 aa9.44□□□□□ -0.9
CUX1-205ENST00000425244 PHF3Q92576 2039 aaKnown RBP9.44□□□□□ -0.9
CUX1-205ENST00000425244 LOC390937A0A1W2PQ73 354 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 HMSDA8MTL9 139 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 PRSS44E7EML9 344 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 F10P00742 488 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 ZNF735P0CB33 412 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 VSIG8P0DPA2 414 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 GK2Q14410 553 aaPredicted RBP9.43□□□□□ -0.9
CUX1-205ENST00000425244 THEM4Q5T1C6 240 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 CDH26Q8IXH8 852 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 PAQR4Q8N4S7 273 aaPredicted RBP9.43□□□□□ -0.9
CUX1-205ENST00000425244 NOXO1Q8NFA2 376 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 SEC22AQ96IW7 307 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 SDHAF2Q9NX18 166 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 PLEKHA6Q9Y2H5 1048 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 CEP295Q9C0D2 2601 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 ATMQ13315 3056 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 VAMP1P23763 118 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 ZNF93P35789 620 aaPredicted RBP9.43□□□□□ -0.9
CUX1-205ENST00000425244 PTGDSP41222 190 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 LY6G6FQ5SQ64 297 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 RAB12Q6IQ22 244 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 SVIPQ8NHG7 77 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 CASTOR1Q8WTX7 329 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 AQP3Q92482 292 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 NICN1Q9BSH3 213 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 MRPL13Q9BYD1 178 aaKnown RBP9.43□□□□□ -0.9
CUX1-205ENST00000425244 IL17BQ9UHF5 180 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 VSIG4Q9Y279 399 aa9.43□□□□□ -0.9
CUX1-205ENST00000425244 A0A0A6YYH2 397 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 A0A1W2PNV4 684 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 A6NJ64 397 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 NPIPB13A6NJU9 1138 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 OR6C65A6NJZ3 312 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 NPIPB4C9JG80 1138 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 STMND1H3BQB6 276 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 NMBP08949 121 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ZNF43P17038 809 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 RAB6AP20340 208 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ANOS1P23352 680 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 HRH1P35367 487 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ZNF121P58317 390 aaPredicted RBP9.42□□□□□ -0.9
CUX1-205ENST00000425244 MPPED2Q15777 294 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ZNF260Q3ZCT1 412 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 TMEM81Q6P7N7 255 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ZNF546Q86UE3 836 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ZBTB8AQ96BR9 441 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 RASL10BQ96S79 203 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ALX4Q9H161 411 aaPredicted RBP9.42□□□□□ -0.9
CUX1-205ENST00000425244 GPR84Q9NQS5 396 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 SLC5A6Q9Y289 635 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 RHBDD3Q9Y3P4 386 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 EML6Q6ZMW3 1958 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 SPTBN4Q9H254 2564 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ZNF726A6NNF4 738 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 ZNF878C9JN71 531 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 G3V3Y1 287 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 TRAF3IP2O43734 574 aaPredicted RBP9.42□□□□□ -0.9
CUX1-205ENST00000425244 BPNT1O95861 308 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 MPIG6BO95866 241 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 PMP2P02689 132 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 CD74P04233 296 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 HOXD4P09016 255 aaPredicted RBP9.42□□□□□ -0.9
CUX1-205ENST00000425244 QDPRP09417 244 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 PGA4P0DJD7 388 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 PGA3P0DJD8 388 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 AKR1C4P17516 323 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 MSX1P28360 303 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 MEF2DQ14814 521 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 BEX5Q5H9J7 111 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 FAM57BQ71RH2 274 aa9.42□□□□□ -0.9
CUX1-205ENST00000425244 LYPD6Q86Y78 171 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms