RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ADIPOR1Q96A54 375 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 EMC6Q9BV81 110 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 LPAR5Q9H1C0 372 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 RPS10P5Q9NQ39 176 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 A0A1W2PPC4 97 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 METTL12A8MUP2 240 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 CSTBP04080 98 aaKnown RBP19.84■□□□□ 0.77
TRIM28-202ENST00000341753 OR8U9P0C7N5 309 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 DAOP14920 347 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 PGCP20142 388 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 SKA3Q8IX90 412 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 OR8U1Q8NH10 309 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 SLC46A1Q96NT5 459 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 NECAB3Q96P71 396 aaPredicted RBP19.84■□□□□ 0.77
TRIM28-202ENST00000341753 ST6GALNAC5Q9BVH7 336 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 NIT2Q9NQR4 276 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 RP1P56715 2156 aa19.84■□□□□ 0.77
TRIM28-202ENST00000341753 AHSA1O95433 338 aa19.83■□□□□ 0.77
TRIM28-202ENST00000341753 ANOS1P23352 680 aa19.83■□□□□ 0.77
TRIM28-202ENST00000341753 OR3A4PP47883 348 aa19.83■□□□□ 0.77
TRIM28-202ENST00000341753 OR51E1Q8TCB6 317 aa19.83■□□□□ 0.77
TRIM28-202ENST00000341753 C20orf24Q9BUV8 137 aa19.83■□□□□ 0.77
TRIM28-202ENST00000341753 FAM206AQ9NX38 181 aa19.83■□□□□ 0.77
TRIM28-202ENST00000341753 THADAQ6YHU6 1953 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 IGHV5-51A0A0C4DH38 117 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 FRG2CA6NGY1 282 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 S100A6P06703 90 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 ZNF44P15621 663 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 IGFBP4P22692 258 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 PTAFRP25105 342 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 PLCXD2Q0VAA5 305 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 DEFB133Q30KQ1 61 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 CLEC9AQ6UXN8 241 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 NUP54Q7Z3B4 507 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 GALNTL5Q7Z4T8 443 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 RAB3CQ96E17 227 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 AQP10Q96PS8 301 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 RTBDNQ9BSG5 229 aaPredicted RBP19.83■□□□□ 0.76
TRIM28-202ENST00000341753 PBOV1Q9GZY1 135 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 RAB18Q9NP72 206 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 SMCO4Q9NRQ5 59 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 RPH3AQ9Y2J0 694 aaPredicted RBP19.83■□□□□ 0.76
TRIM28-202ENST00000341753 WIF1Q9Y5W5 379 aa19.83■□□□□ 0.76
TRIM28-202ENST00000341753 A8MVM7 634 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 NPIPB7O75200 414 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 SLC6A9P48067 706 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 POLR2HP52434 150 aaKnown RBP19.82■□□□□ 0.76
TRIM28-202ENST00000341753 PNLDC1Q8NA58 520 aaKnown RBP19.82■□□□□ 0.76
TRIM28-202ENST00000341753 HIST1H2BAQ96A08 127 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 ARL5BQ96KC2 179 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 CDC6Q99741 560 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 GSN-AS1Q9NRJ2 163 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 C1orf196B1AJZ1 125 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 KNG1P01042 644 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 ECH1Q13011 328 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 EIF2S3LQ2VIR3 472 aaKnown RBP19.82■□□□□ 0.76
TRIM28-202ENST00000341753 SLAMF6Q96DU3 332 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 NUDT22Q9BRQ3 303 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 SLC26A1Q9H2B4 701 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 TMEM14DPA8MWL7 114 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 C10orf142B7Z368 130 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 NPIPA5E9PKD4 350 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 FCGR3AP08637 254 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 CCR5P51681 352 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 EFNA3P52797 238 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 POU3F1Q03052 451 aaPredicted RBP19.82■□□□□ 0.76
TRIM28-202ENST00000341753 Q6ZRG5 221 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 C9orf40Q8IXQ3 194 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 OR13G1Q8NGZ3 307 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 ARHGAP5-AS1Q96IT6 56 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 KIRREL1Q96J84 757 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 LANCL2Q9NS86 450 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 NPIPA1Q9UND3 350 aa19.82■□□□□ 0.76
TRIM28-202ENST00000341753 MRPS28Q9Y2Q9 187 aaKnown RBP19.82■□□□□ 0.76
TRIM28-202ENST00000341753 DDAH2O95865 285 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 SNRNP70P08621 437 aaKnown RBP19.81■□□□□ 0.76
TRIM28-202ENST00000341753 C16orf47Q6ZP98 133 aaPredicted RBP19.81■□□□□ 0.76
TRIM28-202ENST00000341753 TTLL10Q6ZVT0 673 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 ZNF721Q8TF20 911 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 SAT2Q96F10 170 aaPredicted RBP19.81■□□□□ 0.76
TRIM28-202ENST00000341753 RSRP1Q9BUV0 290 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 ZNF576Q9H609 170 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 SLC2A4RGQ9NR83 387 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 A6NLC8 198 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 TMEM50BP56557 158 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 FOXL2P58012 376 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 ARFRP1Q13795 201 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 HLA-DQA1Q5Y7H0 255 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 ZNF248Q8NDW4 579 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 OR5D14Q8NGL3 314 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 OR5H2Q8NGV7 314 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 CA14Q9ULX7 337 aa19.81■□□□□ 0.76
TRIM28-202ENST00000341753 MS4A18H0YCH9 400 aa19.8■□□□□ 0.76
TRIM28-202ENST00000341753 CD5P06127 495 aa19.8■□□□□ 0.76
TRIM28-202ENST00000341753 S100A9P06702 114 aaKnown RBP19.8■□□□□ 0.76
TRIM28-202ENST00000341753 MYF5P13349 255 aa19.8■□□□□ 0.76
TRIM28-202ENST00000341753 AMY2BP19961 511 aa19.8■□□□□ 0.76
TRIM28-202ENST00000341753 POLR2GP62487 172 aaKnown RBP eCLIP19.8■□□□□ 0.76
TRIM28-202ENST00000341753 MS4A18Q3C1V0 323 aa19.8■□□□□ 0.76
TRIM28-202ENST00000341753 KRBOX4Q5JUW0 171 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms