RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 OR56B2PQ8NGI1 322 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 GHSRQ92847 366 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 COMMD4Q9H0A8 199 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 APCP25054 2843 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 A0A1B0GVI7 797 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 LOC107986453A0A1B0GWG9 222 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 LOC390937A0A1W2PQ73 354 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 MTRF1O75570 445 aaKnown RBP18.93■□□□□ 0.62
SDC3-202ENST00000339394 DDOSTP39656 456 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 SNRPD2P62316 118 aaKnown RBP18.93■□□□□ 0.62
SDC3-202ENST00000339394 UBE2UQ5VVX9 321 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 OR51A4Q8NGJ6 313 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 OR10AC1Q8NH08 325 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 PGLYRP3Q96LB9 341 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 ISYNA1Q9NPH2 558 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 CSMD1Q96PZ7 3565 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 ABCA12Q86UK0 2595 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 ATP6V1B1P15313 513 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 MLLT11Q13015 90 aaPredicted RBP18.93■□□□□ 0.62
SDC3-202ENST00000339394 Q6ZSR3 168 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 KCTD8Q6ZWB6 473 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 SEMA6DQ8NFY4 1073 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 OR8G5Q8NG78 346 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 OR14K1Q8NGZ2 314 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 IGFBPL1Q8WX77 278 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 FCGR1BQ92637 280 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 OPALINQ96PE5 141 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 MSL2Q9HCI7 577 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 GPR160Q9UJ42 338 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 HHLA2Q9UM44 414 aa18.93■□□□□ 0.62
SDC3-202ENST00000339394 PLSCR5A0PG75 271 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 M0R233 179 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 NAT2P11245 290 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 BMP4P12644 408 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 ACHEP22303 614 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 MAP2K3P46734 347 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 ZCCHC24Q8N2G6 241 aaKnown RBP18.92■□□□□ 0.62
SDC3-202ENST00000339394 CCL19Q99731 98 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 ZNF281Q9Y2X9 895 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 V9GYS6 101 aa18.92■□□□□ 0.62
SDC3-202ENST00000339394 FLNBO75369 2602 aaKnown RBP18.91■□□□□ 0.62
SDC3-202ENST00000339394 INMTO95050 263 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 CD1AP06126 327 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 LIPAP38571 399 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 RIPPLY1Q0D2K3 151 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 TPBGQ13641 420 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 NEDD8Q15843 81 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 ARMCX4Q5H9R4 360 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 LIPKQ5VXJ0 399 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 PAMR1Q6UXH9 720 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 Q6ZR03 302 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 CSNK2A3Q8NEV1 391 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 RGP1Q92546 391 aaPredicted RBP18.91■□□□□ 0.62
SDC3-202ENST00000339394 GTF3AQ92664 365 aaKnown RBP18.91■□□□□ 0.62
SDC3-202ENST00000339394 UFD1Q92890 307 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 SLC30A2Q9BRI3 323 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 DYNLRB1Q9NP97 96 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 CYSLTR2Q9NS75 346 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 MRPL15Q9P015 296 aaKnown RBP18.91■□□□□ 0.62
SDC3-202ENST00000339394 CGGBP1Q9UFW8 167 aaPredicted RBP18.91■□□□□ 0.62
SDC3-202ENST00000339394 PIGLQ9Y2B2 252 aa18.91■□□□□ 0.62
SDC3-202ENST00000339394 AKAP6Q13023 2319 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 A6NIN4 97 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 ZSCAN5BA6NJL1 495 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 TRIM64CA6NLI5 447 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 DHRS7CA6NNS2 312 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 RPSAP08865 295 aaKnown RBP18.9■□□□□ 0.62
SDC3-202ENST00000339394 GPR50Q13585 617 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 FTMTQ8N4E7 242 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 CCDC54Q8NEL0 328 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 ITFG2Q969R8 447 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 CACNG6Q9BXT2 260 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 MS4A5Q9H3V2 200 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 TMEM100Q9NV29 134 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 FBXO9Q9UK97 447 aaPredicted RBP18.9■□□□□ 0.62
SDC3-202ENST00000339394 RHBDD3Q9Y3P4 386 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 PMF1-BGLAPU3KQ54 211 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 SPG11Q96JI7 2443 aa18.9■□□□□ 0.62
SDC3-202ENST00000339394 RAI1Q7Z5J4 1906 aaPredicted RBP18.9■□□□□ 0.62
SDC3-202ENST00000339394 MAGEA13PA6NCF6 341 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 OVOL3O00110 214 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 LMX1BO60663 402 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 CPEP16870 476 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 FAHP16930 419 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 ZNF12P17014 697 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 CD53P19397 219 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 CA6P23280 308 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 PSMB9P28065 219 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 MAGEB1P43366 347 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 ZNF81P51508 661 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 YIF1BQ5BJH7 314 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 OR13G1Q8NGZ3 307 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 GPR148Q8TDV2 347 aa18.89■□□□□ 0.62
SDC3-202ENST00000339394 ANKRD30BLA7E2S9 258 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 C17orf100A8MU93 164 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 HLA-DPB1P04440 258 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 SMIM18P0DKX4 95 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 CDKN1AP38936 164 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 PPOXP50336 477 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 RPS11P62280 158 aaKnown RBP eCLIP18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms