RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 YIPF6Q96EC8 236 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 ADGRL4Q9HBW9 690 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 CLEC2LP0C7M8 214 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 UQCRC1P31930 480 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 FABP5Q01469 135 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 ASAH1Q13510 395 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 XAF1Q6GPH4 301 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 ANKRD16Q6P6B7 361 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-201ENST00000335508 PLPP7Q8NBV4 271 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 OR5M1Q8NGP8 315 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF275Q9NSD4 429 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-201ENST00000335508 FBXO7Q9Y3I1 522 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TMEM82A0PJX8 343 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 GAAP10253 952 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 IL13RA1P78552 427 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 USF2Q15853 346 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-201ENST00000335508 PNLIPRP3Q17RR3 467 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 RGS7BPQ6MZT1 257 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-201ENST00000335508 NRARPQ7Z6K4 114 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 ZDHHC23Q8IYP9 409 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 FAM83FQ8NEG4 500 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-201ENST00000335508 PIGTQ969N2 578 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 DERL3Q96Q80 235 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TTTY12Q9BZ98 90 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 OR51J1Q9H342 316 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TRAV6A0A075B6T7 132 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 FXYD6-FXYD2A0A087WZ82 144 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 CENPVL1A0A0U1RR11 272 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 OR2AT4A6NND4 320 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 CD300LBA8K4G0 201 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 KLF4O43474 513 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TGM1P22735 817 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 LIMK1P53667 647 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 IRF3Q14653 427 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ARSJQ5FYB0 599 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 WDR38Q5JTN6 314 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 CDH26Q8IXH8 852 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 GABRG1Q8N1C3 465 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 BMPERQ8N8U9 685 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 NARS2Q96I59 477 aaKnown RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 GPA33Q99795 319 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 FXYD6Q9H0Q3 95 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 AMDHD2Q9Y303 409 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 C5orf49A4QMS7 147 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 F5H0A9 414 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 HEXAP06865 529 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ACSM4P0C7M7 580 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 MGMTP16455 207 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 HLA-DMAP28067 261 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 SRP9P49458 86 aaKnown RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF121P58317 390 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ERVK-16P61578 105 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TAF9Q16594 264 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 MESTQ5EB52 335 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 UBE2NLQ5JXB2 153 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 LHFPL2Q6ZUX7 228 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 CREB3L2Q70SY1 520 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 SLC36A1Q7Z2H8 476 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 CCDC71Q8IV32 467 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 OR6K3Q8NGY3 331 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 STOML3Q8TAV4 291 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 LAMP3Q9UQV4 416 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF724A8MTY0 619 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 C9orf172C9J069 976 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TFP02787 698 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 SEMG1P04279 462 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 GABRR1P24046 479 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 PTAFRP25105 342 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 MAGEA5P43359 124 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 GSK3AP49840 483 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 CRYBA2P53672 197 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TAS2R20P59543 309 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TSPO2Q5TGU0 170 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 LAX1Q8IWV1 398 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF441Q8N8Z8 693 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 BOLLQ8N9W6 283 aaKnown RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 AIFM2Q9BRQ8 373 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 SDHAF2Q9NX18 166 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 FBXL2Q9UKC9 423 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 C13orf42A0A1B0GVH6 325 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 NKX6-3A6NJ46 265 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 C16orf97H3BN30 126 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 SCGB1D2O95969 90 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 PPP3CBP16298 524 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 IL3RAP26951 378 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 HOXD11P31277 338 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 GABRA2P47869 451 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TSC22D1Q15714 1073 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 CARTPTQ16568 116 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF709Q8N972 641 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 OR1J1Q8NGS3 322 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 AKR7LQ8NHP1 331 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 EMG1Q92979 244 aaKnown RBP6.09□□□□□ -1.43
SF3B1-201ENST00000335508 HGDQ93099 445 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 OCSTAMPQ9BR26 566 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TMEM38BQ9NVV0 291 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF69Q9UC07 566 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 TRAPPC2LQ9UL33 140 aa6.09□□□□□ -1.43
SF3B1-201ENST00000335508 A0A096LPE4 126 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms