RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GPA33Q99795 319 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 UQCC2Q9BRT2 126 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 FUZQ9BT04 418 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 WACQ9BTA9 647 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ADI1Q9BV57 179 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 NTN4Q9HB63 628 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 GCM1Q9NP62 436 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 NRIP3Q9NQ35 241 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 PLEK2Q9NYT0 353 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 VSX1Q9NZR4 365 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 IL19Q9UHD0 177 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 NDRG4Q9ULP0 352 aaKnown RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 SIGLEC7Q9Y286 467 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 LOC110117498-PIK3R3F6TDL0 507 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CXCR6O00574 342 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 RER1O15258 196 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CCNKO75909 580 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 ZNF205O95201 554 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CYB5R3P00387 301 aaPredicted RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 PLATP00750 562 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 IFNW1P05000 195 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 RNASE1P07998 156 aaKnown RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 NR2C1P13056 603 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 RAC2P15153 192 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 SELEP16581 610 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 TUBG1P23258 451 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 FPR2P25090 351 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CDKN2AP42771 156 aaKnown RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 ARHGDIAP52565 204 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 PRSS12P56730 875 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 LSM6P62312 80 aaKnown RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 HOXA4Q00056 320 aaPredicted RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 LIPEQ05469 1076 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 IL18R1Q13478 541 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 AQP6Q13520 282 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CDK10Q15131 360 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 KCNMB1Q16558 191 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 MEP1BQ16820 701 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 FAM201AQ5SY85 155 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 OR2T2Q6IF00 324 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 UNQ6126/PRO20091Q6UXV3 157 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 FBXW12Q6X9E4 464 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 COLCA1Q6ZS62 124 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 C9orf139Q6ZV77 190 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 KCTD8Q6ZWB6 473 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 JAZF1Q86VZ6 243 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 DHFR2Q86XF0 187 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CADM3Q8N126 398 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 OR5AS1Q8N127 324 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 SPICQ8N5J4 248 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 NPEPL1Q8NDH3 523 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 ZNF555Q8NEP9 628 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 OR10AD1Q8NGE0 317 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 OR1F12Q8NHA8 337 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 ST7LQ8TDW4 575 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 PTP4A1Q93096 173 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CENPNQ96H22 339 aaPredicted RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 FAM46AQ96IP4 442 aaKnown RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 HSH2DQ96JZ2 352 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 MEGF10Q96KG7 1140 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 C7orf34Q96L11 122 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 TSSK2Q96PF2 358 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 PKP2Q99959 881 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 HOPXQ9BPY8 73 aaPredicted RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 FNDC11Q9BVV2 318 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 CHID1Q9BWS9 393 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 NUAK2Q9H093 628 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 SYT4Q9H2B2 425 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 MMP27Q9H306 513 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 NMNAT1Q9HAN9 279 aaPredicted RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 SPAG4Q9NPE6 437 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 TUBG2Q9NRH3 451 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 DDX28Q9NUL7 540 aaKnown RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 SMPD3Q9NY59 655 aaPredicted RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 ASH2LQ9UBL3 628 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 IL20RAQ9UHF4 553 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 PPP1R3CQ9UQK1 317 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 COA3Q9Y2R0 106 aaPredicted RBP5.62□□□□□ -1.51
VPS53-213ENST00000572334 AUP1Q9Y679 476 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 LHFPL6Q9Y693 200 aa5.62□□□□□ -1.51
VPS53-213ENST00000572334 IGHV3OR16-10A0A075B7F0 116 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 IGLV1-36A0A0B4J1U3 117 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 TRBV4-1A0A0J9YWV2 114 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 MDFIC2A0A1B0GVS7 189 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 IQCF6A8MYZ5 107 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 CLDN34H7C241 214 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SOCS2O14508 198 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SHOXO15266 292 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SULT1B1O43704 296 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SLC16A7O60669 478 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 NOS1APO75052 506 aaPredicted RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 FCN3O75636 299 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 NDUFB2O95178 105 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 FSTL3O95633 263 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ZNF682O95780 498 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 TXNDC12O95881 172 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SERPINA1P01009 418 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 PPIAL4GP0DN37 164 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 PSKH1P11801 424 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 NCK1P16333 377 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms