RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ARL6IP1Q15041 203 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 TRIM16LQ309B1 348 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 ACSF3Q4G176 576 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 PYDC2Q56P42 97 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 TRIQKQ629K1 86 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 RAB12Q6IQ22 244 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 MZT2BQ6NZ67 158 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 Q6ZT83 130 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 FAM57BQ71RH2 274 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 UTS2BQ765I0 119 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 PRSS45Q7RTY3 260 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 LAX1Q8IWV1 398 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 SKA3Q8IX90 412 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 CPAMD8Q8IZJ3 1885 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 RDH10Q8IZV5 341 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 FAM169BQ8N8A8 192 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 SAMD12Q8N8I0 201 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 PNLDC1Q8NA58 520 aaKnown RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 SEMA6DQ8NFY4 1073 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 OR1M1Q8NGA1 313 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 OR10S1Q8NGN2 331 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 OR13C5Q8NGS8 318 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 MBD3L2Q8NHZ7 208 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 OR51E1Q8TCB6 317 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 CHPT1Q8WUD6 406 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 SPSB1Q96BD6 273 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 FGGYQ96C11 551 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 ALKBH3Q96Q83 286 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 EXTL2Q9UBQ6 330 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 FBLN5Q9UBX5 448 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 CSAG2Q9Y5P2 127 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 PTPRBP23467 1997 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 LOC100289279A0A1B0GTE1 492 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 A0A1W2PPK0 400 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 CIB4A0PJX0 185 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 METTL21EPA6NDL7 271 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 H3BUI4 141 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 J3QRK9 145 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 HPGDSO60760 199 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 NCR1O76036 304 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 ECDO95905 644 aaPredicted RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 TGM6O95932 706 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 IL18BPO95998 194 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 WNT11O96014 354 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 LCATP04180 440 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 TPOP07202 933 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 GSTT2BP0CG30 244 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 ATF1P18846 271 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 RAB6AP20340 208 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 PRKACBP22694 351 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 HTR2CP28335 458 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 APLNRP35414 380 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 MMP15P51511 669 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 AP3S2P59780 193 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 RAB1AP62820 205 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 PMP22Q01453 160 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 CNN3Q15417 329 aaKnown RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 GUSBP1Q15486 140 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 GSG1Q2KHT4 349 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 PLEKHN1Q494U1 663 aaPredicted RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 PABPC1L2AQ5JQF8 200 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 C1orf100Q5SVJ3 147 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 FAM27D1Q5T7N8 215 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 C1orf185Q5T7R7 199 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 ZNF529Q6P280 563 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 ZNF585AQ6P3V2 769 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 CNIH2Q6PI25 160 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 NUFIP2Q7Z417 695 aaKnown RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 OR8H2Q8N162 312 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 Q8N402 240 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 OR8B12Q8NGG6 310 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 OR1K1Q8NGR3 316 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 FAM57AQ8TBR7 257 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 APOBEC3DQ96AK3 386 aaPredicted RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 PPP1R14BQ96C90 147 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 HAVCR1Q96D42 359 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 COX4I2Q96KJ9 171 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 TAAR6Q96RI8 345 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 C7orf50Q9BRJ6 194 aaKnown RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 NUDT16L1Q9BRJ7 211 aaKnown RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 SFXN3Q9BWM7 321 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 C1QTNF5Q9BXJ0 243 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 SRRQ9GZT4 340 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 MIXL1Q9H2W2 232 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 TP63Q9H3D4 680 aaPredicted RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 PIGMQ9H3S5 423 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 METTL17Q9H7H0 456 aaPredicted RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 PPP1R3EQ9H7J1 279 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 LIN7BQ9HAP6 207 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 GPR84Q9NQS5 396 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 TBCCD1Q9NVR7 557 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 TAS2R8Q9NYW2 309 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 EIF3KQ9UBQ5 218 aaKnown RBP6.96□□□□□ -1.3
VPS39-213ENST00000570062 PROCRQ9UNN8 238 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 V9GYH0 126 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 V9GYS6 101 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 LOC400499M0QZD8 3231 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 ITPR1Q14643 2758 aa6.96□□□□□ -1.3
VPS39-213ENST00000570062 DSPP15924 2871 aaKnown RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 A0A1B0GTI1 187 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms