RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PCDHGB5Q9Y5G0 923 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 CAPN7Q9Y6W3 813 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 TRBV23-1A0A0A0MS06 115 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 A0A1W2PQ09 198 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 H0YAE9 185 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 C3orf84H3BNL1 204 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 ANGPTL7O43827 346 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 CHST1O43916 411 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 PTBP3O95758 552 aaKnown RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 ACSM4P0C7M7 580 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 MUC1P15941 1255 aaPredicted RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 PAX6P26367 422 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 HOXD3P31249 432 aaPredicted RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 GRK5P34947 590 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 MRPL19P49406 292 aaKnown RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 GSK3BP49841 420 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 BMXP51813 675 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 WDR4P57081 412 aaKnown RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 VSNL1P62760 191 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 ST3GAL3Q11203 375 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 KRR1Q13601 381 aaKnown RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 DOC2BQ14184 412 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 MEP1BQ16820 701 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 PCK2Q16822 640 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 RSPO1Q2MKA7 263 aaPredicted RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 VMACQ2NL98 169 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 KLHL22Q53GT1 634 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 CRIP3Q6Q6R5 217 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 EPGNQ6UW88 154 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 LIAT1Q6ZQX7 453 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 NAA40Q86UY6 237 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 OR9Q1Q8NGQ5 310 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 LZICQ8WZA0 190 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 DPF1Q92782 380 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 RCC1LQ96I51 464 aaKnown RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 DDOQ99489 341 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 PITX2Q99697 317 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 NDEL1Q9GZM8 345 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 NUAK2Q9H093 628 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 METTL8Q9H825 291 aaKnown RBP5.95□□□□□ -1.46
VPS4A-203ENST00000564399 ZNF702PQ9H963 129 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 SERTAD4Q9NUC0 356 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 C14orf119Q9NWQ9 140 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 NDUFAF1Q9Y375 327 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 LHFPL6Q9Y693 200 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 U3KQK5 164 aa5.95□□□□□ -1.46
VPS4A-203ENST00000564399 DNAH3Q8TD57 4116 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 TMEM120BA0PK00 339 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 M0R1W7 72 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 BHLHE40O14503 412 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 SOCS2O14508 198 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 IMPA2O14732 288 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 ACOT8O14734 319 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 ANGPT2O15123 496 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 DUS4LO95620 317 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 LHBP01229 141 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 IFNA14P01570 189 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 SELLP14151 372 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 NDUFB7P17568 137 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 PAICSP22234 425 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 NAA10P41227 235 aaPredicted RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 YAP1P46937 504 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 CRYBA2P53672 197 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 TPTEP56180 551 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 GMFBP60983 142 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 HIST1H3AP68431 136 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 PRKCDQ05655 676 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 TRAP1Q12931 704 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 DCTN2Q13561 401 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 FHL1Q13642 323 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 NFYCQ13952 458 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 KCNMB1Q16558 191 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 AANATQ16613 207 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 ZBED5Q49AG3 693 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 HIST2H3PS2Q5TEC6 136 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 PGM2L1Q6PCE3 622 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 HIST2H3AQ71DI3 136 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 CCDC80Q76M96 950 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 DPY19L4Q7Z388 723 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 RNF144BQ7Z419 303 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 LINC00346Q8IVM7 164 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 OR5T2Q8NGG2 359 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 OR5D13Q8NGL4 314 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 OR2AJ1Q8NGZ0 328 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 OR8S1Q8NH09 359 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 OR2AE1Q8NHA4 323 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 C8orf46Q8TAG6 207 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 SEH1LQ96EE3 360 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 DUS3LQ96G46 650 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 ATF6BQ99941 703 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 FNDC11Q9BVV2 318 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 PRSS22Q9GZN4 317 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 MEGF9Q9H1U4 602 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 KAT8Q9H7Z6 458 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 NMNAT1Q9HAN9 279 aaPredicted RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 RNPEPL1Q9HAU8 725 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 ADA2Q9NZK5 511 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 MRPL15Q9P015 296 aaKnown RBP5.94□□□□□ -1.46
VPS4A-203ENST00000564399 RHCGQ9UBD6 479 aa5.94□□□□□ -1.46
VPS4A-203ENST00000564399 NKX6-3A6NJ46 265 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms