RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 HMGXB4Q9UGU5 601 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 RAB23Q9ULC3 237 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 ASB3Q9Y575 518 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 IGKV1-27A0A075B6S5 117 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 GOLGA6L4A6NEF3 574 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 A8MWL6 223 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 D6RAR5 112 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 DNALI1O14645 258 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-216ENST00000555550 OVOL1O14753 267 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 AQP9O43315 295 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 NMT2O60551 498 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 CLDN11O75508 207 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 TAGLN2P37802 199 aaKnown RBP1.29□□□□□ -2.2
SCFD1-216ENST00000555550 IFITM3Q01628 133 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 SEMG2Q02383 582 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 ZNF141Q15928 474 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 C9orf135Q5VTT2 229 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 CD300LGQ6UXG3 332 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 TBC1D21Q8IYX1 336 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 NECAB1Q8N987 351 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 UBAC2Q8NBM4 344 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 KCNG3Q8TAE7 436 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 SLC2A14Q8TDB8 520 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 RXFP4Q8TDU9 374 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 NRBF2Q96F24 287 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 IGF2BP2-AS1Q96M15 143 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 TOLLIPQ9H0E2 274 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 ABCG5Q9H222 651 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 RETNQ9HD89 108 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 DYRK4Q9NR20 520 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 NLE1Q9NVX2 485 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-216ENST00000555550 PCDH11XQ9BZA7 1347 aa1.29□□□□□ -2.2
SCFD1-216ENST00000555550 COL11A1P12107 1806 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-216ENST00000555550 IGLV10-54A0A075B6I4 117 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 CLOCKO15516 846 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 TGM6O95932 706 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 SERPINA3P01011 423 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 MMP7P09237 267 aaPredicted RBP1.28□□□□□ -2.2
SCFD1-216ENST00000555550 TROVE2P10155 538 aaKnown RBP eCLIP1.28□□□□□ -2.2
SCFD1-216ENST00000555550 SLC2A3P11169 496 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 HTR1DP28221 377 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 RAB7AP51149 207 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 ACTR1AP61163 376 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 ZNF660Q6AZW8 331 aaPredicted RBP1.28□□□□□ -2.2
SCFD1-216ENST00000555550 SLC8B1Q6J4K2 584 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 REEP3Q6NUK4 255 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 MORN3Q6PF18 240 aaPredicted RBP1.28□□□□□ -2.2
SCFD1-216ENST00000555550 WDR59Q6PJI9 974 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 Q6ZSR6 202 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 CNPY4Q8N129 248 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 ACTL9Q8TC94 416 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 CAPSLQ8WWF8 208 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 CDS1Q92903 461 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 KCNS1Q96KK3 526 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 OR4K3Q96R72 315 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 PDCD1LG2Q9BQ51 273 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 RACGAP1Q9H0H5 632 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 NEUROG2Q9H2A3 272 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 DSN1Q9H410 356 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 RRAGDQ9NQL2 400 aaPredicted RBP1.28□□□□□ -2.2
SCFD1-216ENST00000555550 ZNF302Q9NR11 478 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 SLC39A1Q9NY26 324 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 PISDQ9UG56 409 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 FHOD3Q2V2M9 1422 aa1.28□□□□□ -2.2
SCFD1-216ENST00000555550 RPRD2Q5VT52 1461 aaKnown RBP1.28□□□□□ -2.2
SCFD1-216ENST00000555550 IGHV3OR16-9A0A0B4J2B5 98 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.27□□□□□ -2.21
SCFD1-216ENST00000555550 SIRPB1O00241 398 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 SCAMP2O15127 329 aaKnown RBP1.27□□□□□ -2.21
SCFD1-216ENST00000555550 OR2J3O76001 311 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 FSTL3O95633 263 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 MAS1P04201 325 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 THRAP10827 490 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 IFI30P13284 250 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 NELFEP18615 380 aaKnown RBP1.27□□□□□ -2.21
SCFD1-216ENST00000555550 CSNK2A2P19784 350 aaPredicted RBP1.27□□□□□ -2.21
SCFD1-216ENST00000555550 EIF2S2P20042 333 aaKnown RBP1.27□□□□□ -2.21
SCFD1-216ENST00000555550 RRM2P31350 389 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 CD70P32970 193 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 PCK1P35558 622 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 KRTAP12-1P59990 96 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 NAB1Q13506 487 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 TPBGQ13641 420 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 TRAM2Q15035 370 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 SLC9A3R2Q15599 337 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 SSX2Q16385 188 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 CENPPQ6IPU0 288 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 SPNS3Q6ZMD2 512 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 TMPRSS11AQ6ZMR5 421 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 SLC16A14Q7RTX9 510 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 ORMDL3Q8N138 153 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 OR9K2Q8NGE7 335 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 OR52N1Q8NH53 320 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 ENKURQ8TC29 256 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 DCAKDQ8WVC6 231 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 NT5C3BQ969T7 300 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 BTN2A3PQ96KV6 586 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 C18orf15Q96N68 181 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 OR2V2Q96R30 315 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 CENPKQ9BS16 269 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms