RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 TSSK2Q96PF2 358 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 CGREF1Q99674 301 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 NUAK2Q9H093 628 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 HDHD2Q9H0R4 259 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 MEGF9Q9H1U4 602 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 POLR1DQ9Y2S0 133 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 NDUFAF1Q9Y375 327 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 DCTN6O00399 190 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 XKRYO14609 159 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 GMDSO60547 372 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 KHDRBS3O75525 346 aaKnown RBP10.46□□□□□ -0.73
VPS29-211ENST00000553128 LCATP04180 440 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 CD14P08571 375 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 VIMP08670 466 aaKnown RBP10.46□□□□□ -0.73
VPS29-211ENST00000553128 SLC18A1P54219 525 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 ZNF92Q03936 586 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 TMEM95Q3KNT9 176 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 PTCHD4Q6ZW05 846 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 CCDC80Q76M96 950 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 WDR86Q86TI4 376 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 Q8N2B8 174 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 PLPP7Q8NBV4 271 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 GJC3Q8NFK1 279 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 OR5T2Q8NGG2 359 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 OR2AE1Q8NHA4 323 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 C8orf46Q8TAG6 207 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 H1FXQ92522 213 aaKnown RBP10.46□□□□□ -0.73
VPS29-211ENST00000553128 DDOQ99489 341 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 POLR2J2Q9GZM3 115 aaKnown RBP10.46□□□□□ -0.73
VPS29-211ENST00000553128 WNT10AQ9GZT5 417 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 FAM234AQ9H0X4 552 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 POLR2J3Q9H1A7 115 aaKnown RBP10.46□□□□□ -0.73
VPS29-211ENST00000553128 RHCGQ9UBD6 479 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 A4GNTQ9UNA3 340 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 PCDHGB5Q9Y5G0 923 aa10.46□□□□□ -0.73
VPS29-211ENST00000553128 CSMD3Q7Z407 3707 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 EFCAB9A8MZ26 197 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 AHCYL1O43865 530 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 GPR4P46093 362 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 YAP1P46937 504 aaKnown RBP10.45□□□□□ -0.74
VPS29-211ENST00000553128 TGM4P49221 684 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 CSNK2BP67870 215 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 PRKCDQ05655 676 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 EGFEM1PQ0D2K5 195 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 MALLQ13021 153 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 KRR1Q13601 381 aaKnown RBP10.45□□□□□ -0.74
VPS29-211ENST00000553128 MICBQ29980 383 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 VMACQ2NL98 169 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 SNAI3Q3KNW1 292 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 TBPL2Q6SJ96 375 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 MRPL21Q7Z2W9 205 aaKnown RBP10.45□□□□□ -0.74
VPS29-211ENST00000553128 LINC00346Q8IVM7 164 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 LNX2Q8N448 690 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 LRRC29Q8WV35 223 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 RASSF5Q8WWW0 418 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 CDCA4Q9BXL8 241 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 RAB18Q9NP72 206 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 PNRC2Q9NPJ4 139 aaKnown RBP10.45□□□□□ -0.74
VPS29-211ENST00000553128 AURKCQ9UQB9 309 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 U3KQK5 164 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 STARD9Q9P2P6 4700 aa10.45□□□□□ -0.74
VPS29-211ENST00000553128 TMEM120BA0PK00 339 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 J3KTA2 159 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 POLR3GO15318 223 aaPredicted RBP10.44□□□□□ -0.74
VPS29-211ENST00000553128 NDUFB3O43676 98 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 ANGPTL7O43827 346 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 CENPAP49450 140 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 IDH3AP50213 366 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 RAB13P51153 203 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 SLC35A2P78381 396 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 TRAP1Q12931 704 aaKnown RBP10.44□□□□□ -0.74
VPS29-211ENST00000553128 ECH1Q13011 328 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 NCR3LG1Q68D85 454 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 SLC36A1Q7Z2H8 476 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 DYNAPQ8N1N2 210 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 DMRTB1Q96MA1 342 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 SLC22A4Q9H015 551 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 PPP1R3EQ9H7J1 279 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 METTL8Q9H825 291 aaKnown RBP10.44□□□□□ -0.74
VPS29-211ENST00000553128 NMNAT1Q9HAN9 279 aaPredicted RBP10.44□□□□□ -0.74
VPS29-211ENST00000553128 INPP5EQ9NRR6 644 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 SNX13Q9Y5W8 968 aa10.44□□□□□ -0.74
VPS29-211ENST00000553128 GGT3PA6NGU5 568 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 C3orf84H3BNL1 204 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 M0R1W7 72 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 SOCS2O14508 198 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 PF4V1P10720 104 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 MUC1P15941 1255 aaPredicted RBP10.43□□□□□ -0.74
VPS29-211ENST00000553128 GGT2P36268 569 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 MDH1P40925 334 aaKnown RBP10.43□□□□□ -0.74
VPS29-211ENST00000553128 CDKN2AP42771 156 aaKnown RBP10.43□□□□□ -0.74
VPS29-211ENST00000553128 GMFBP60983 142 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 CD83Q01151 205 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 ST3GAL3Q11203 375 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 DGUOKQ16854 277 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 ZBED5Q49AG3 693 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 PLA1AQ53H76 456 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 TCTEX1D4Q5JR98 221 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 GLYATL3Q5SZD4 288 aa10.43□□□□□ -0.74
VPS29-211ENST00000553128 STUMQ69YW2 141 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms