RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZNF345Q14585 488 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 MICBQ29980 383 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PHF19Q5T6S3 580 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 GLIPR1L1Q6UWM5 242 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ACOT7LQ6ZUV0 252 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ABHD12BQ7Z5M8 362 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 NAA40Q86UY6 237 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 DTX1Q86Y01 620 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PLXDC1Q8IUK5 500 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR5AS1Q8N127 324 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 SLC22A24Q8N4F4 322 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 NFAM1Q8NET5 270 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR5D18Q8NGL1 313 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR10R2Q8NGX6 335 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 POC1BQ8TC44 478 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ST8SIA1Q92185 356 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PTX4Q96A99 478 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 RRNAD1Q96FB5 475 aaKnown RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 C1orf147Q96MC9 270 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ADAT1Q9BUB4 502 aaKnown RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 SLC7A5P2Q9GIP4 190 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ASH2LQ9UBL3 628 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 KIAA1549Q9HCM3 1950 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 VSTM2BA6NLU5 285 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM14DPA8MWL7 114 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ADAP1O75689 374 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 BPNT1O95861 308 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 GIMD1P0DJR0 217 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 RAB3AP20336 220 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 APOBEC1P41238 236 aaKnown RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 NPY4RP50391 375 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM50BP56557 158 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 SNTB1Q13884 538 aaKnown RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 SLC9A3R2Q15599 337 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 RAB12Q6IQ22 244 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 DEGS2Q6QHC5 323 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ANKRD37Q7Z713 158 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PLPP5Q8NEB5 264 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR10G3Q8NGC4 313 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR8B12Q8NGG6 310 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR4K15Q8NH41 348 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 NPRL2Q8WTW4 380 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ASB13Q8WXK3 278 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 MAFIPQ8WZ33 124 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 FOXRED1Q96CU9 486 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 DDIT4LQ96D03 193 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM41AQ96HV5 264 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PHB2Q99623 299 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 MRPL13Q9BYD1 178 aaKnown RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 GAREM1Q9H706 876 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 GPR84Q9NQS5 396 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ASF1BQ9NVP2 202 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PCDHB10Q9UN67 800 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 LHX6Q9UPM6 363 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 POLR1DQ9Y2S0 133 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 CSAG2Q9Y5P2 127 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 H0YIZ8 118 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 SDCBPO00560 298 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 IFNA6P05013 189 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 GP1BAP07359 652 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 LAP3P28838 519 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 SFTPDP35247 375 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF121P58317 390 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 CLRN1P58418 232 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 SRSF3P84103 164 aaKnown RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 SMAD4Q13485 552 aaKnown RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 LPCAT3Q6P1A2 487 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF529Q6P280 563 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 C5orf46Q6UWT4 87 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF574Q6ZN55 896 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM200AQ86VY9 491 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ARMC10Q8N2F6 343 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ZDHHC22Q8N966 263 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 OR5D14Q8NGL3 314 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 THAP6Q8TBB0 222 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 DCUN1D4Q92564 292 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM230Q96A57 120 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 LIN37Q96GY3 246 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 WDR77Q9BQA1 342 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 OCSTAMPQ9BR26 566 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 C5orf66Q9H5L9 145 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 AKIRIN1Q9H9L7 192 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ZC4H2Q9NQZ6 224 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ALKBH4Q9NXW9 302 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 PPP4R1LQ9P1A2 415 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 KLHL13Q9P2N7 655 aa6.63□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF107Q9UII5 783 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 MRPS28Q9Y2Q9 187 aaKnown RBP6.63□□□□□ -1.35
LIMA1-213ENST00000552720 A0A0B4J2A0 478 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 MSGN1A6NI15 193 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 GPR31O00270 319 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF208O43345 1280 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 TRAF3IP2O43734 574 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 TSPAN9O75954 239 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 OR2J2O76002 312 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 HTR3BO95264 441 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 CRHP06850 196 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 HEXBP07686 556 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 HCKP08631 526 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PGA4P0DJD7 388 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms