RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 HEYLQ9NQ87 328 aaPredicted RBP3.84□□□□□ -1.79
LIMS1-214ENST00000542845 C20orf141Q9NUB4 165 aa3.84□□□□□ -1.79
LIMS1-214ENST00000542845 TBCCD1Q9NVR7 557 aa3.84□□□□□ -1.79
LIMS1-214ENST00000542845 C1orf123Q9NWV4 160 aa3.84□□□□□ -1.79
LIMS1-214ENST00000542845 CALML5Q9NZT1 146 aa3.84□□□□□ -1.79
LIMS1-214ENST00000542845 HERC2O95714 4834 aa3.84□□□□□ -1.79
LIMS1-214ENST00000542845 OOEPA6NGQ2 149 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 HMX3A6NHT5 357 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 A6NLC8 198 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 C5orf58C9J3I9 102 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 RAB27BO00194 218 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 ZSCAN12O43309 604 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 SGCEO43556 437 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 NDUFB3O43676 98 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 PLIN3O60664 434 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 FMO6PO60774 539 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 TNFRSF6BO95407 300 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 ANP32DO95626 131 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 FSTL3O95633 263 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 KRT75O95678 551 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 MT-ATP6P00846 226 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 IGF2P01344 180 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 SERPINE1P05121 402 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 FGF4P08620 206 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 CST2P09228 141 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 TUBG1P23258 451 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 CA6P23280 308 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 CHATP28329 748 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 GCAP28676 217 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 GSK3BP49841 420 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 LUMP51884 338 aaPredicted RBP3.83□□□□□ -1.8
LIMS1-214ENST00000542845 RAD23AP54725 363 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 DSTNP60981 165 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 GNG11P61952 73 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 EMX2Q04743 252 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 ACSM1Q08AH1 577 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 LRRC74AQ0VAA2 488 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 TOP3AQ13472 1001 aaPredicted RBP3.83□□□□□ -1.8
LIMS1-214ENST00000542845 CASP8Q14790 479 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OR8G1Q15617 311 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 NPTX1Q15818 432 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 HIST3H3Q16695 136 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 CCDC153Q494R4 210 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 BEND6Q5SZJ8 279 aaPredicted RBP3.83□□□□□ -1.8
LIMS1-214ENST00000542845 FAM27BQ5VT28 67 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 HHATQ5VTY9 493 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OTPQ5XKR4 325 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 TTC33Q6PID6 262 aaPredicted RBP3.83□□□□□ -1.8
LIMS1-214ENST00000542845 NANOGNBQ7Z5D8 188 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 LCA5Q86VQ0 697 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 FAM216BQ8N7L0 139 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 LY6G5BQ8NDX9 201 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 SPATA4Q8NEY3 305 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 NUDT10Q8NFP7 164 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OR51D1Q8NGF3 324 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OR4X2Q8NGF9 303 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OR8J2Q8NGG1 315 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OR5T2Q8NGG2 359 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OR5L1Q8NGL2 311 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 PIFOQ8TCI5 191 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 WIPF2Q8TF74 440 aaPredicted RBP3.83□□□□□ -1.8
LIMS1-214ENST00000542845 IFT81Q8WYA0 676 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 NUDT11Q96G61 164 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 LYZL4Q96KX0 146 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 COG8Q96MW5 612 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 DUX3Q96PT4 197 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 RBP7Q96R05 134 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 KRTAP4-11Q9BYQ6 195 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 OR10A2Q9H208 303 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 TRIM36Q9NQ86 728 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 TUBG2Q9NRH3 451 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 ABCB10Q9NRK6 738 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 UGT2A1Q9Y4X1 527 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 SMAD5-AS1Q9Y6J3 95 aa3.83□□□□□ -1.8
LIMS1-214ENST00000542845 RYR1P21817 5038 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 HUWE1Q7Z6Z7 4374 aaKnown RBP3.82□□□□□ -1.8
LIMS1-214ENST00000542845 CPSF4LA6NMK7 179 aaKnown RBP3.82□□□□□ -1.8
LIMS1-214ENST00000542845 C12orf71A8MTZ7 269 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 J3KRW8 73 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 PAX4O43316 350 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 TPST1O60507 370 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 TRIM13O60858 407 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 GLCEO94923 617 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 LY6G6CO95867 125 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 TFF1P04155 84 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 ALDOBP05062 364 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 NDUFB7P17568 137 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 PAICSP22234 425 aaKnown RBP3.82□□□□□ -1.8
LIMS1-214ENST00000542845 COX7A1P24310 79 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 AQP2P41181 271 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 THBS3P49746 956 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 UCP3P55916 312 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 RGS8P57771 180 aaPredicted RBP3.82□□□□□ -1.8
LIMS1-214ENST00000542845 ENDOGQ14249 297 aaKnown RBP3.82□□□□□ -1.8
LIMS1-214ENST00000542845 RABL3Q5HYI8 236 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 C9orf152Q5JTZ5 239 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 C10orf128Q5T292 105 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 NCR3LG1Q68D85 454 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 SLC25A47Q6Q0C1 308 aa3.82□□□□□ -1.8
LIMS1-214ENST00000542845 RNF165Q6ZSG1 346 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms