RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PLPP1O14494 284 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 CCL25O15444 150 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 FCMRO60667 390 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 CNMDO75829 334 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 NPPBP16860 134 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 SERPINA2P20848 420 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 APOBEC3AP31941 199 aaPredicted RBP11.12□□□□□ -0.63
USP3-203ENST00000538686 NOVA1P51513 510 aaKnown RBP11.12□□□□□ -0.63
USP3-203ENST00000538686 RPS20P60866 119 aaKnown RBP11.12□□□□□ -0.63
USP3-203ENST00000538686 TAF9Q16594 264 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 ADGRE4PQ86SQ3 457 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 HS6ST3Q8IZP7 471 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 DTWD2Q8NBA8 298 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 TMEM104Q8NE00 496 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 OR52E2Q8NGJ4 325 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 OR5L2Q8NGL0 311 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 TMEM159Q96B96 161 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 NUDT11Q96G61 164 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 VPS25Q9BRG1 176 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 ELOVL1Q9BW60 279 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 NMNAT2Q9BZQ4 307 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 SPATC1LQ9H0A9 340 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 APOBEC3BQ9UH17 382 aaKnown RBP11.12□□□□□ -0.63
USP3-203ENST00000538686 ADAM29Q9UKF5 820 aa11.12□□□□□ -0.63
USP3-203ENST00000538686 ZNF443Q9Y2A4 671 aaPredicted RBP11.12□□□□□ -0.63
USP3-203ENST00000538686 CBY3A6NI87 242 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 CEACAM18A8MTB9 384 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 H0YL77 283 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 TOMM40O96008 361 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 HMGN2P05204 90 aaKnown RBP11.11□□□□□ -0.63
USP3-203ENST00000538686 DTYMKP23919 212 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 HOXC8P31273 242 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 COL10A1Q03692 680 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 TMEM183BQ1AE95 376 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 RNF151Q2KHN1 245 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 FAM219AQ8IW50 185 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 APCDD1LQ8NCL9 501 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 OR2L2Q8NH16 312 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 PFN4Q8NHR9 129 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 HAS2Q92819 552 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 BOD1Q96IK1 185 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 PRRX2Q99811 253 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 FAM83CQ9BQN1 747 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 CABLES2Q9BTV7 478 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 PARP12Q9H0J9 701 aaKnown RBP11.11□□□□□ -0.63
USP3-203ENST00000538686 P4HTMQ9NXG6 502 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 B3GAT1Q9P2W7 334 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 SRPK3Q9UPE1 567 aa11.11□□□□□ -0.63
USP3-203ENST00000538686 CYR61O00622 381 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 LEFTY1O75610 366 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 DEDDO75618 318 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 TBX18O95935 607 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 IFNA21P01568 189 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 AKR1A1P14550 325 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 ZNF708P17019 499 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 FUT3P21217 361 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 ALDH3B1P43353 468 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CDK3Q00526 305 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 AGERQ15109 404 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 ZNF506Q5JVG8 444 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 OGFOD3Q6PK18 319 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 TTC9BQ8N6N2 239 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 ZNF676Q8N7Q3 588 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 RCBTB1Q8NDN9 531 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 BHLHE23Q8NDY6 225 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CDS1Q92903 461 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CAPN10Q9HC96 672 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CREBZFQ9NS37 354 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 IKZF2Q9UKS7 526 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 RAB22AQ9UL26 194 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 A0A1B0GU03 582 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.1□□□□□ -0.63
USP3-203ENST00000538686 CLEC18AA5D8T8 446 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 ZNF860A6NHJ4 632 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 FIGNL2A6NMB9 653 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 K7N7A8 449 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 ETV2O00321 342 aaPredicted RBP11.1□□□□□ -0.63
USP3-203ENST00000538686 OR2J2O76002 312 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CD160O95971 181 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 BSGP35613 385 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 NCBP2P52298 156 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP3-203ENST00000538686 PRKAG1P54619 331 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 UBE2G2P60604 165 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 RPL19P84098 196 aaKnown RBP11.1□□□□□ -0.63
USP3-203ENST00000538686 RUNX2Q13950 521 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 GPR157Q5UAW9 335 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CLEC18BQ6UXF7 455 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 LINC01551Q86U37 167 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CLEC18CQ8NCF0 446 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 OR56B2PQ8NGI1 322 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 TMEM170AQ8WVE7 144 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 RNF166Q96A37 237 aaPredicted RBP11.1□□□□□ -0.63
USP3-203ENST00000538686 OR10C1Q96KK4 312 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 Q96M85 177 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 OR7D2Q96RA2 312 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 RARRES2Q99969 163 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 CNTD2Q9H8S5 307 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 GPR35Q9HC97 309 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 LYRM2Q9NU23 88 aaPredicted RBP11.1□□□□□ -0.63
USP3-203ENST00000538686 C20orf141Q9NUB4 165 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms