RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ZNF581Q9P0T4 197 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 CLCF1Q9UBD9 225 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 PCSK1NQ9UHG2 260 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 ZNF221Q9UK13 617 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 RASD1Q9Y272 281 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 APOBP04114 4563 aaKnown RBP2.79□□□□□ -1.96
CD44-235ENST00000532339 TRBV11-1A0A0K0K1C0 115 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 C1orf232A0A0U1RR37 186 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 DPRXA6NFQ7 191 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 FAM220BPB1ANY3 271 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 H3BMQ9 156 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 ANGPTL7O43827 346 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 TPST2O60704 377 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 SNX4O95219 450 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 SLC2A10O95528 541 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 ACTL6AO96019 429 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 RPS2P15880 293 aaKnown RBP2.78□□□□□ -1.96
CD44-235ENST00000532339 CD151P48509 253 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 TNFRSF17Q02223 184 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 ST3GAL3Q11203 375 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 RAB40BQ12829 278 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 IFT88Q13099 833 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 EXOC3L2Q2M3D2 409 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 TEX44Q53QW1 395 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 TMEM225Q6GV28 225 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 FRMPD2BQ6IN97 320 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 ZNF544Q6NX49 715 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 KCNIP4Q6PIL6 250 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 TMEM220Q6QAJ8 160 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 ZNF600Q6ZNG1 722 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 FAM183BPQ6ZVS7 135 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 APTXQ7Z2E3 356 aaKnown RBP2.78□□□□□ -1.96
CD44-235ENST00000532339 MOB3BQ86TA1 216 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 SERPINA9Q86WD7 417 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 C15orf54Q8N8G6 183 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 GPR26Q8NDV2 337 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 OR4S1Q8NGB4 309 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 OR4D5Q8NGN0 318 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 OR8J1Q8NGP2 316 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 OR13C2Q8NGS9 318 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 OR1F12Q8NHA8 337 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 RHOXF1Q8NHV9 184 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 PAQR8Q8TEZ7 354 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 AENQ8WTP8 325 aaKnown RBP2.78□□□□□ -1.96
CD44-235ENST00000532339 C7orf34Q96L11 122 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 CSPG4P5Q96PW8 444 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 GON7Q9BXV9 100 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 DRC3Q9H069 523 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 ABCB10Q9NRK6 738 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 PNO1Q9NRX1 252 aaKnown RBP2.78□□□□□ -1.96
CD44-235ENST00000532339 SENP1Q9P0U3 644 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 STOX2Q9P2F5 926 aaPredicted RBP2.78□□□□□ -1.96
CD44-235ENST00000532339 PRO0461Q9UI25 63 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 PTBP2Q9UKA9 531 aaKnown RBP2.78□□□□□ -1.96
CD44-235ENST00000532339 RPH3ALQ9UNE2 315 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 VSIG4Q9Y279 399 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 OARD1Q9Y530 152 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 MAD1L1Q9Y6D9 718 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 NINQ8N4C6 2090 aa2.78□□□□□ -1.96
CD44-235ENST00000532339 NCKAP5O14513 1909 aa2.78□□□□□ -1.97
CD44-235ENST00000532339 TET2Q6N021 2002 aaPredicted RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 TRAV26-1A0A087WT03 109 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 OR2AG2A6NM03 316 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 E7EQL1 145 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 TAPBPO15533 448 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 ZNF208O43345 1280 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 OR2J2O76002 312 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 IFNW1P05000 195 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 HPNP05981 417 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 H2AFZP0C0S5 128 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 H2BFMP0C1H6 154 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 CCL3P10147 92 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 IGLL1P15814 213 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 PSMB1P20618 241 aaKnown RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 CALB2P22676 271 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 IGHV1-2P23083 117 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 GDF1P27539 372 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 PEBP1P30086 187 aaKnown RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 CD80P33681 288 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 PCK1P35558 622 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 DEKP35659 375 aaKnown RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 GRIA1P42261 906 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 XCR1P46094 333 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 P2RY1P47900 373 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 RFX3P48380 749 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 CDK9P50750 372 aaKnown RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 FABP6P51161 128 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 AIF1P55008 147 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 RPL26P61254 145 aaKnown RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 HMGN5P82970 282 aaKnown RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 SLC10A7Q0GE19 358 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 FAM53BQ14153 422 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 GANABQ14697 944 aaKnown RBP2.77□□□□□ -1.97
CD44-235ENST00000532339 TSC22D1Q15714 1073 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 NDUFA9Q16795 377 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 BOLA3Q53S33 107 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 RNLSQ5VYX0 342 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 C9orf40Q8IXQ3 194 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 UBQLNLQ8IYU4 475 aa2.77□□□□□ -1.97
CD44-235ENST00000532339 APCDD1LQ8NCL9 501 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms