RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PRSS1P07477 247 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 AQP6Q13520 282 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 ANKRD55Q3KP44 614 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM176BQ3YBM2 270 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 C1orf220Q5T0J3 134 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 OR52E1Q8NGJ3 308 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 PHOSPHO2Q8TCD6 241 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 SLC7A10Q9NS82 523 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 CACNG4Q9UBN1 327 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 EXOGQ9Y2C4 368 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 DIP2CQ9Y2E4 1556 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 A0A0A6YYC8 382 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 PYCARD-AS1I3L0S3 204 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 I3L1I5 382 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 PPM1DO15297 605 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 GJB5O95377 273 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 SRSF9Q13242 221 aaKnown RBP eCLIP10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 FZD2Q14332 565 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 C1orf140Q5VVS0 124 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 SLC48A1Q6P1K1 146 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 ADAMTS17Q8TE56 1095 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM255BQ8WV15 326 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 PP6455Q8WZ26 134 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 FAM234AQ9H0X4 552 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 HINT3Q9NQE9 182 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 OBP2AQ9NY56 170 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 FTSJ1Q9UET6 329 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 PRSS50Q9UI38 385 aa10.21□□□□□ -0.78
LIMCH1-208ENST00000508501 CTDSPLO15194 276 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 GYPAP02724 150 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 ANKRD34CP0C6C1 535 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 CD1CP29017 333 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 PITX1P78337 314 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 RBPJQ06330 500 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 EXOSC7Q15024 291 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 SMUG1Q53HV7 270 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 OR1L4Q8NGR5 311 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 ELOVL1Q9BW60 279 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 AP5S1Q9NUS5 200 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 MROH2AA6NES4 1674 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 SMAD6O43541 496 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 CRYBA1P05813 215 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 HIST1H1CP16403 213 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 DCTDP32321 178 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 PMP22Q01453 160 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 CTBSQ01459 385 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 AMMECR1LQ6DCA0 310 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 OVCH2Q7RTZ1 564 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 RIMKLAQ8IXN7 391 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 OR5D13Q8NGL4 314 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM70Q9BUB7 260 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 APOOQ9BUR5 198 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 PKIBQ9C010 78 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 C20orf27Q9GZN8 174 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 PARP11Q9NR21 331 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 ZNF275Q9NSD4 429 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 VAX2Q9UIW0 290 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 KAT6AQ92794 2004 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 M0QZ24 198 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 SELENOFO60613 162 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 HLA-GP17693 338 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 CD82P27701 267 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 GSG1Q2KHT4 349 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 NCMAPQ5T1S8 102 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 CALHM3Q86XJ0 350 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 ARIH2OSQ8N7S6 290 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 COPS9Q8WXC6 57 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 POM121Q96HA1 1249 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 TXNDC17Q9BRA2 123 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 ZNF391Q9UJN7 358 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 PPP1R3CQ9UQK1 317 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 DCCP43146 1447 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 COL5A2P05997 1499 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 G3V3Y1 287 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 PRAMEF26H0Y7S4 382 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 ISLRO14498 428 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 SULT1A1P50225 295 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 MLF1P58340 268 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 AESQ08117 197 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 DUSP5Q16690 384 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 FAM78BQ5VT40 261 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 OR1L1Q8NH94 360 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 CA5BP1Q8WTZ4 195 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 EID2BQ96D98 161 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 ACY3Q96HD9 319 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM56Q96MV1 263 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 LYRM4Q9HD34 91 aa10.2□□□□□ -0.78
LIMCH1-208ENST00000508501 IQGAP1P46940 1657 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 PMS2P1A4D2B8 440 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM88BA6NKF7 163 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 EDN1P05305 212 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 CD46P15529 392 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 CLEC12BQ2HXU8 276 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 OR2B11Q5JQS5 317 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 DOLPP1Q86YN1 238 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 NLGN4XQ8N0W4 816 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM99Q8N816 258 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 OR4F17Q8NGA8 305 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 OR5M1Q8NGP8 315 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 OR2A5Q96R48 311 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms