RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 LINC00869P0C866 280 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 SLC25A4P12235 298 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 SYN1P17600 705 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 GABRB3P28472 473 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 NUMBP49757 651 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 SLC37A1P57057 533 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 ZNF774Q6NX45 483 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 RNASEKQ6P5S7 137 aaKnown RBP5.34□□□□□ -1.55
USF3-204ENST00000496826 DEGS2Q6QHC5 323 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 RTL10Q7L3V2 364 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 C9orf40Q8IXQ3 194 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 C1orf174Q8IYL3 243 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 DEFB106AQ8N104 65 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 OR52M1Q8NGK5 317 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 ADAMTS17Q8TE56 1095 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 SNRNP40Q96DI7 357 aaKnown RBP5.34□□□□□ -1.55
USF3-204ENST00000496826 CELF6Q96J87 481 aaKnown RBP5.34□□□□□ -1.55
USF3-204ENST00000496826 TSPAN32Q96QS1 320 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 SORT1Q99523 831 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 KLK14Q9P0G3 267 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 CGB1A6NKQ9 187 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 FAM74A7A6NL05 159 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 B4DEV8 164 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 MKRN2OSH3BPM6 223 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 CLDN34H7C241 214 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 CELP19835 753 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 CD96P40200 585 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 RIPPLY3P57055 190 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 FZD5Q13467 585 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 PLPPR4Q7Z2D5 763 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 TMEM102Q8N9M5 508 aaPredicted RBP5.34□□□□□ -1.55
USF3-204ENST00000496826 OR9Q2Q8NGE9 314 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 CGREF1Q99674 301 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 SMIM3Q9BZL3 60 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 TXNRD2Q9NNW7 524 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 ANKMY1Q9P2S6 941 aa5.34□□□□□ -1.55
USF3-204ENST00000496826 TRAV8-7A0A075B6U6 113 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 TMEM235A6NFC5 223 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 DPRXA6NFQ7 191 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 FCGR3AP08637 254 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 GLIPR1P48060 266 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 OR4X2Q8NGF9 303 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 OR52I1Q8NGK6 324 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 OR52I2Q8NH67 350 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 STARD4Q96DR4 205 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 NIT2Q9NQR4 276 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 DMAC2Q9NW81 257 aa5.34□□□□□ -1.56
USF3-204ENST00000496826 WSB2Q9NYS7 404 aaPredicted RBP5.34□□□□□ -1.56
USF3-204ENST00000496826 TRAV38-1A0A0B4J264 116 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 ZNF320A2RRD8 509 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 C1QTNF9BB2RNN3 333 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 ALX3O95076 343 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 HOXB3P14651 431 aaPredicted RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 LEPP41159 167 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 PCP4P48539 62 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 BEX3Q00994 111 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 TNFRSF17Q02223 184 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 PMCHL1Q16048 86 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 ZNF468Q5VIY5 522 aaPredicted RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 PDZD3Q86UT5 571 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 PDPNQ86YL7 162 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 AKR7LQ8NHP1 331 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 ZNF845Q96IR2 970 aaPredicted RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 RASL11BQ9BPW5 248 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 WDR83Q9BRX9 315 aaKnown RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 RBKSQ9H477 322 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 TAF9BQ9HBM6 251 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 ZNF724A8MTY0 619 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 AQP7O14520 342 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 COCHO43405 550 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 LANCL1O43813 399 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 OR7C1O76099 320 aaPredicted RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 OR10J1P30954 320 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 SOX2P48431 317 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 ATP4BP51164 291 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 SRSF6Q13247 344 aaKnown RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 PCBP2Q15366 365 aaKnown RBP eCLIP5.33□□□□□ -1.56
USF3-204ENST00000496826 LHFPL2Q6ZUX7 228 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 DPPA4Q7L190 304 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 BPIFB2Q8N4F0 458 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 LRTOMTQ8WZ04 291 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 EMG1Q92979 244 aaKnown RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 ZMYND19Q96E35 227 aaPredicted RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 INIPQ9NRY2 104 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 SEMA4GQ9NTN9 838 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 TMEM38BQ9NVV0 291 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 SHANK2Q9UPX8 1470 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 SERTM1A2A2V5 107 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 IFNL4K9M1U5 179 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 LEFTY2O00292 366 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 UPK2O00526 184 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 NDUFB3O43676 98 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 SEMA4FO95754 770 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 HBZP02008 142 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 GPX4P36969 197 aaPredicted RBP5.33□□□□□ -1.56
USF3-204ENST00000496826 ZNF813Q6ZN06 617 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 OR2L13Q8N349 312 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 FBXL6Q8N531 539 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 RPS4Y2Q8TD47 263 aa5.33□□□□□ -1.56
USF3-204ENST00000496826 PURBQ96QR8 312 aaKnown RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms