RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 DUX4L4P0CJ87 422 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 DUX4L5P0CJ88 424 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 DUX4L6P0CJ89 424 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 DUX4L7P0CJ90 424 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 ZNF823P16415 610 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 MSX2P35548 267 aaPredicted RBP10.46□□□□□ -0.73
SKA1-205ENST00000494518 PRKXP51817 358 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 ZNF362Q5T0B9 420 aaPredicted RBP10.46□□□□□ -0.73
SKA1-205ENST00000494518 METTL11BQ5VVY1 283 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 CD276Q5ZPR3 534 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 DUX4L9Q6RFH8 374 aaPredicted RBP10.46□□□□□ -0.73
SKA1-205ENST00000494518 HACD2Q6Y1H2 254 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 SCCPDHQ8NBX0 429 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 PROKR2Q8NFJ6 384 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 OR56B2PQ8NGI1 322 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 ZNRF4Q8WWF5 429 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 GATAD2BQ8WXI9 593 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 ST8SIA4Q92187 359 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 SPTSSAQ969W0 71 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 SEMA6AQ9H2E6 1030 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 EGLN3Q9H6Z9 239 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 ACOXLQ9NUZ1 547 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 DUX4Q9UBX2 424 aa10.46□□□□□ -0.73
SKA1-205ENST00000494518 IGHV1-69DA0A0B4J2H0 117 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 A0A1B0GUS0 222 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 TNFRSF13BO14836 293 aaPredicted RBP10.45□□□□□ -0.74
SKA1-205ENST00000494518 GPR137BO60478 399 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 CCDC22O60826 627 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 NDUFA7O95182 113 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 IGHV1-69P01742 117 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 RRM2P31350 389 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 NPY4RP50391 375 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 DLX1P56177 255 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 KCNJ8Q15842 424 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 ZNF620Q6ZNG0 422 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 BTN2A1Q7KYR7 527 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 RHOUQ7L0Q8 258 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 FAM90A1Q86YD7 464 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 C1QL4Q86Z23 238 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 PNLDC1Q8NA58 520 aaKnown RBP10.45□□□□□ -0.74
SKA1-205ENST00000494518 OR9Q1Q8NGQ5 310 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 FAM71F1Q96KD3 344 aaPredicted RBP10.45□□□□□ -0.74
SKA1-205ENST00000494518 CITED1Q99966 193 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 COPS4Q9BT78 406 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 SIRPDQ9H106 197 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 DNAJB11Q9UBS4 358 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 RNF114Q9Y508 228 aa10.45□□□□□ -0.74
SKA1-205ENST00000494518 TET2Q6N021 2002 aaPredicted RBP10.45□□□□□ -0.74
SKA1-205ENST00000494518 TRAV38-1A0A0B4J264 116 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 NDUFAB1O14561 156 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 DVL1O14640 695 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 GMNNO75496 209 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 SEMG1P04279 462 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 GYPBP06028 91 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 SPARCP09486 303 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 GSSP48637 474 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 BPIFB3P59826 476 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 GMFBP60983 142 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 TAF13Q15543 124 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 DCXRQ7Z4W1 244 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 TMEM86BQ8N661 226 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 GCSAMQ8N6F7 178 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 OR9Q2Q8NGE9 314 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 SSMEM1Q8WWF3 244 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 UBE2FQ969M7 185 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 SEH1LQ96EE3 360 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 PYURFQ96I23 114 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 TRIM15Q9C019 465 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 SLC22A4Q9H015 551 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 SPAG4Q9NPE6 437 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 CENPMQ9NSP4 180 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 ONECUT1Q9UBC0 465 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 NOP16Q9Y3C1 178 aaKnown RBP10.44□□□□□ -0.74
SKA1-205ENST00000494518 POMT1Q9Y6A1 747 aa10.44□□□□□ -0.74
SKA1-205ENST00000494518 A0A1W2PRD5 423 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 A0A1W2PRF3 423 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 A0A1W2PRM7 423 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 M0QZ24 198 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 BHLHE40O14503 412 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 TBX1O43435 398 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 GMDSO60547 372 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 PTBP3O95758 552 aaKnown RBP10.43□□□□□ -0.74
SKA1-205ENST00000494518 TSPAN15O95858 294 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 LIPFP07098 398 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 SMIM11AP58511 58 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 CSNK2BP67870 215 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 ASPHD2Q6ICH7 369 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 PGBD2Q6P3X8 592 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 VMO1Q7Z5L0 202 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 WDR86Q86TI4 376 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 LINC01006Q8NI28 216 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 TBC1D15Q8TC07 691 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 GNPDA2Q8TDQ7 276 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 LRRC29Q8WV35 223 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 MCUR1Q96AQ8 359 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 CCL13Q99616 98 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 PKP2Q99959 881 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 RBM4BQ9BQ04 359 aaKnown RBP10.43□□□□□ -0.74
SKA1-205ENST00000494518 MMP27Q9H306 513 aa10.43□□□□□ -0.74
SKA1-205ENST00000494518 CCDC134Q9H6E4 229 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms