RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CAPSLQ8WWF8 208 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 GIMAP1Q8WWP7 306 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 ASB13Q8WXK3 278 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 DMRTB1Q96MA1 342 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 C1orf147Q96MC9 270 aaPredicted RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 SMAD5Q99717 465 aaKnown RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 ATG5Q9H1Y0 275 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 NOX3Q9HBY0 568 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 ASH1LQ9NR48 2969 aaKnown RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 DEPPQ9NTK1 212 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 FOXJ2Q9P0K8 574 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 ANAPC10Q9UM13 185 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 BOKQ9UMX3 212 aaPredicted RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 ING4Q9UNL4 249 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 POLR1DQ9Y2S0 133 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 V9GYS6 101 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 A0A0G2JMM0 328 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 A0A1W2PPB8 328 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 A0A1W2PRS3 328 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 PMS2P1A4D2B8 440 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 KIR3DP1A8MWS1 328 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 TNFSF11O14788 317 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 LMX1BO60663 402 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 RAD1O60671 282 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 NEURL1O76050 574 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 OR2A4O95047 310 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 TBPP20226 339 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CRYGSP22914 178 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CD82P27701 267 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 THBS4P35443 961 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 DLSTP36957 453 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CX3CR1P49238 355 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CLDN15P56746 228 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 TAS2R19P59542 299 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CXADRP78310 365 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 SPOCK1Q08629 439 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 AIMP2Q13155 320 aaKnown RBP9.44□□□□□ -0.9
USP4-214ENST00000491791 ZMYND11Q15326 602 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 SF3B4Q15427 424 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP4-214ENST00000491791 PCGF3Q3KNV8 242 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 LINC00303Q3SY05 128 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 ZNF260Q3ZCT1 412 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 PDSS1Q5T2R2 415 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CARD17Q5XLA6 110 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 ZNF626Q68DY1 528 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 SFRP4Q6FHJ7 346 aaPredicted RBP9.44□□□□□ -0.9
USP4-214ENST00000491791 LAMTOR1Q6IAA8 161 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 DRAM2Q6UX65 266 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 OR52N4Q8NGI2 321 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 OR14L1PQ8NHC6 308 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 OR51E1Q8TCB6 317 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 RELTQ969Z4 430 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CPNE4Q96A23 557 aaPredicted RBP9.44□□□□□ -0.9
USP4-214ENST00000491791 OR2A7Q96R45 310 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 SLC25A21Q9BQT8 299 aaPredicted RBP9.44□□□□□ -0.9
USP4-214ENST00000491791 LINC00470Q9BZP3 86 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CNTD2Q9H8S5 307 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 GPN1Q9HCN4 374 aaPredicted RBP9.44□□□□□ -0.9
USP4-214ENST00000491791 GPR84Q9NQS5 396 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP4-214ENST00000491791 PAQR5Q9NXK6 330 aaPredicted RBP9.44□□□□□ -0.9
USP4-214ENST00000491791 SLC2A8Q9NY64 477 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 ABI3Q9P2A4 366 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 ZNF319Q9P2F9 582 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 CGGBP1Q9UFW8 167 aaPredicted RBP9.44□□□□□ -0.9
USP4-214ENST00000491791 ATPIF1Q9UII2 106 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 ZNF391Q9UJN7 358 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 SCP2D1Q9UJQ7 156 aa9.44□□□□□ -0.9
USP4-214ENST00000491791 ZNF462Q96JM2 2506 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 SDK2Q58EX2 2172 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ERVH48-1M5A8F1 160 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 EIF1AYO14602 144 aaKnown RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 FABP7O15540 132 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 CA11O75493 328 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 KDM4BO94953 1096 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ITGB2P05107 769 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 GSTP1P09211 210 aaKnown RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 RFPL3SP0C7P2 107 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 VSIG8P0DPA2 414 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 NAT2P11245 290 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ZNF20P17024 532 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 NAT1P18440 290 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 TCEA1P23193 301 aaKnown RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 CASRP41180 1078 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 SELENOPP49908 381 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 TMPRSS3P57727 454 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 PMPCAQ10713 525 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 UNC119Q13432 240 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 RAB35Q15286 201 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 SGCAQ16586 387 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 Q5BKY6 102 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 RNASE12Q5GAN4 147 aaKnown RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 DCAF10Q5QP82 559 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ABHD17BQ5VST6 288 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 STEAP1BQ6NZ63 245 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 MTFR2Q6P444 385 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ZNF782Q6ZMW2 699 aaPredicted RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 ZNF627Q7L945 461 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 LUZP2Q86TE4 346 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 YRDCQ86U90 279 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms