RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 CITED2Q99967 270 aaPredicted RBP13.18□□□□□ -0.3
USP48-210ENST00000489108 DCTN5Q9BTE1 182 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 FAM234AQ9H0X4 552 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 ADA2Q9NZK5 511 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 PRPF19Q9UMS4 504 aaKnown RBP13.18□□□□□ -0.3
USP48-210ENST00000489108 J3KTA2 159 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 DCTN6O00399 190 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 NDUFB3O43676 98 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 CD33P20138 364 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 PAX6P26367 422 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 SDHAP31040 664 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 IFNA8P32881 189 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 GGT2P36268 569 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 MDH1P40925 334 aaKnown RBP13.17□□□□□ -0.3
USP48-210ENST00000489108 CDKN2AP42771 156 aaKnown RBP13.17□□□□□ -0.3
USP48-210ENST00000489108 ZNF92Q03936 586 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 ACSM1Q08AH1 577 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 TRAP1Q12931 704 aaKnown RBP13.17□□□□□ -0.3
USP48-210ENST00000489108 IKZF1Q13422 519 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 MICBQ29980 383 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 CYBRD1Q53TN4 286 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 TMPRSS11FQ6ZWK6 438 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 LINC00346Q8IVM7 164 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 C11orf53Q8IXP5 236 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 RNF113BQ8IZP6 322 aaKnown RBP13.17□□□□□ -0.3
USP48-210ENST00000489108 WFDC9Q8NEX5 89 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 SLC7A13Q8TCU3 470 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 SEH1LQ96EE3 360 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 AJUBAQ96IF1 538 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 FNDC11Q9BVV2 318 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 RABEP2Q9H5N1 569 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 SERTAD4Q9NUC0 356 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 SNX13Q9Y5W8 968 aa13.17□□□□□ -0.3
USP48-210ENST00000489108 A0A087WUU8 490 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 WI2-2373I1.2A0A1W2PRP0 233 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 GGT3PA6NGU5 568 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 ACOT8O14734 319 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 PPP1R3DO95685 299 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 IFNA14P01570 189 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 MUC1P15941 1255 aaPredicted RBP13.16□□□□□ -0.3
USP48-210ENST00000489108 AMY2BP19961 511 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 MAGOHP61326 146 aaKnown RBP13.16□□□□□ -0.3
USP48-210ENST00000489108 HABP2Q14520 560 aaPredicted RBP13.16□□□□□ -0.3
USP48-210ENST00000489108 TRAM2Q15035 370 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 PCK2Q16822 640 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 RABL3Q5HYI8 236 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 GPR139Q6DWJ6 353 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 PGBD2Q6P3X8 592 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 PGM2L1Q6PCE3 622 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 ZNF730Q6ZMV8 503 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 SLC36A1Q7Z2H8 476 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 TSEN54Q7Z6J9 526 aaKnown RBP13.16□□□□□ -0.3
USP48-210ENST00000489108 CROCCP2Q86T23 111 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 OR51G2Q8NGK0 314 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 OR2AE1Q8NHA4 323 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 LRRC29Q8WV35 223 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 H1FXQ92522 213 aaKnown RBP13.16□□□□□ -0.3
USP48-210ENST00000489108 NKX3-1Q99801 234 aaPredicted RBP13.16□□□□□ -0.3
USP48-210ENST00000489108 ATF6BQ99941 703 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 NPFFR1Q9GZQ6 430 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 MEGF9Q9H1U4 602 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 RAB18Q9NP72 206 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 NRIP3Q9NQ35 241 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP48-210ENST00000489108 IER3IP1Q9Y5U9 82 aa13.16□□□□□ -0.3
USP48-210ENST00000489108 V9GYY5 206 aaPredicted RBP13.16□□□□□ -0.3
USP48-210ENST00000489108 FFAR1O14842 300 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 CHST1O43916 411 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 PTP4A3O75365 173 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 SELLP14151 372 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 ANOS1P23352 680 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 MSX2P35548 267 aaPredicted RBP13.15□□□□□ -0.3
USP48-210ENST00000489108 TGM4P49221 684 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 TPTEP56180 551 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 ECH1Q13011 328 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 LRRC75BQ2VPJ9 315 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 SNAI3Q3KNW1 292 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 LRRC23Q53EV4 343 aaPredicted RBP13.15□□□□□ -0.3
USP48-210ENST00000489108 NCR3LG1Q68D85 454 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 SLC18B1Q6NT16 456 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 MBOAT2Q6ZWT7 520 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 OFCC1Q8IZS5 231 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 OR5T2Q8NGG2 359 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 C8orf46Q8TAG6 207 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 SRA1Q9HD15 236 aaKnown RBP13.15□□□□□ -0.3
USP48-210ENST00000489108 PNRC2Q9NPJ4 139 aaKnown RBP13.15□□□□□ -0.3
USP48-210ENST00000489108 MRPL15Q9P015 296 aaKnown RBP13.15□□□□□ -0.3
USP48-210ENST00000489108 CAPN7Q9Y6W3 813 aa13.15□□□□□ -0.3
USP48-210ENST00000489108 IGLV1-36A0A0B4J1U3 117 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.14□□□□□ -0.31
USP48-210ENST00000489108 NDUFB2O95178 105 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 CRABP1P29762 137 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 KDELR2P33947 212 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 KRTAP10-11P60412 298 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 SELENOWP63302 87 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 CD69Q07108 199 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 LRRC10Q5BKY1 277 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 HCP5Q6MZN7 132 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 ADCK1Q86TW2 530 aa13.14□□□□□ -0.31
USP48-210ENST00000489108 LNX2Q8N448 690 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms