RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 RNF121Q9H920 327 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 ZNF391Q9UJN7 358 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 AKAP13Q12802 2813 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 TMEM272A0A1B0GTI8 110 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 ZNF503-AS2A6NEH8 195 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 RRP8O43159 456 aaKnown RBP12.23□□□□□ -0.45
CLK3-204ENST00000483723 ERCC1P07992 297 aaPredicted RBP12.23□□□□□ -0.45
CLK3-204ENST00000483723 PRF1P14222 555 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 KIR2DL2P43627 348 aaPredicted RBP12.23□□□□□ -0.45
CLK3-204ENST00000483723 TAB1Q15750 504 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 ZNF324BQ6AW86 544 aaPredicted RBP12.23□□□□□ -0.45
CLK3-204ENST00000483723 OR2A2Q6IF42 318 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 DNM1P46Q6ZS02 220 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 UTS2BQ765I0 119 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 COMMD2Q86X83 199 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 OR13C9Q8NGT0 318 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 YIPF5Q969M3 257 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 RFT1Q96AA3 541 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 C11orf54Q9H0W9 315 aaPredicted RBP12.23□□□□□ -0.45
CLK3-204ENST00000483723 RGCCQ9H4X1 137 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 CNTD2Q9H8S5 307 aa12.23□□□□□ -0.45
CLK3-204ENST00000483723 RTTNQ86VV8 2226 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 LOC100509620A0A075B734 347 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 IGKV1-9A0A0C4DH69 117 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 FUOMA2VDF0 154 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 XRCC3O43542 346 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 LANCL1O43813 399 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 HLA-HP01893 362 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 LCATP04180 440 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 GABRA1P14867 456 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 EFNB2P52799 333 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 SF3B4Q15427 424 aaKnown RBP eCLIP12.22□□□□□ -0.452e-6■■■■□ 20.4
CLK3-204ENST00000483723 KRTCAP3Q53RY4 240 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 TMEM53Q6P2H8 277 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 NRARPQ7Z6K4 114 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 BIVMQ86UB2 503 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 JAGN1Q8N5M9 183 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 OR4D6Q8NGJ1 314 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 C15orf40Q8WUR7 153 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 SNRNP27Q8WVK2 155 aaKnown RBP12.22□□□□□ -0.45
CLK3-204ENST00000483723 PP6455Q8WZ26 134 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 SPSB4Q96A44 273 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 ZNF75AQ96N20 296 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 DOCK7Q96N67 2140 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 PLEKHA1Q9HB21 404 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 NOX3Q9HBY0 568 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 FBLN5Q9UBX5 448 aa12.22□□□□□ -0.45
CLK3-204ENST00000483723 CIB4A0PJX0 185 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 MBD3L4A6NDZ8 208 aaPredicted RBP12.21□□□□□ -0.45
CLK3-204ENST00000483723 MBD3L3A6NE82 208 aaPredicted RBP12.21□□□□□ -0.45
CLK3-204ENST00000483723 MBD3L5A6NJ08 208 aaPredicted RBP12.21□□□□□ -0.45
CLK3-204ENST00000483723 SSX4O60224 188 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 CTAG2O75638 210 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 ARSBP15848 533 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 CDK2P24941 298 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 RANBP1P43487 201 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 BCAP31P51572 246 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 RAB1AP62820 205 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 QRFPP83859 136 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 TNK1Q13470 666 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 OR6K3Q8NGY3 331 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 MBD3L2Q8NHZ7 208 aaPredicted RBP12.21□□□□□ -0.45
CLK3-204ENST00000483723 SMIM4Q8WVI0 70 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 ITFG2Q969R8 447 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 ZC3HAV1LQ96H79 300 aaKnown RBP12.21□□□□□ -0.45
CLK3-204ENST00000483723 REEP6Q96HR9 211 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 CHST5Q9GZS9 411 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 SLC22A4Q9H015 551 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 PLSCR4Q9NRQ2 329 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 TP53TG5Q9Y2B4 290 aa12.21□□□□□ -0.45
CLK3-204ENST00000483723 MRPS7Q9Y2R9 242 aaKnown RBP12.21□□□□□ -0.45
CLK3-204ENST00000483723 GTF3C1Q12789 2109 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 NCOR2Q9Y618 2525 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 GABARAPH6UMI1 98 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 EEF1E1O43324 174 aaKnown RBP12.2□□□□□ -0.46
CLK3-204ENST00000483723 FAM157BP0CG42 384 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 TMIGD3P0DMS9 266 aaPredicted RBP12.2□□□□□ -0.46
CLK3-204ENST00000483723 HOXB1P14653 301 aaPredicted RBP12.2□□□□□ -0.46
CLK3-204ENST00000483723 RAB6AP20340 208 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 IGHV1-2P23083 117 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 MRPS10P82664 201 aaKnown RBP12.2□□□□□ -0.46
CLK3-204ENST00000483723 DGCR2P98153 550 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 GFOD2Q3B7J2 385 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 CRIP3Q6Q6R5 217 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 Q6ZT83 130 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 SEM1Q6ZVN7 128 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 IZUMO1Q8IYV9 350 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 POM121L2Q96KW2 1035 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 ZFP3Q96NJ6 502 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 NEDD4LQ96PU5 975 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 NKX3-1Q99801 234 aaPredicted RBP12.2□□□□□ -0.46
CLK3-204ENST00000483723 LINC00854A0A1B0GVQ3 168 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 XRCC2O43543 280 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 BPNT1O95861 308 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 CD79AP11912 226 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 EDN3P14138 238 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 ACKR3P25106 362 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 PTGER4P35408 488 aa12.2□□□□□ -0.46
CLK3-204ENST00000483723 ZNF93P35789 620 aaPredicted RBP12.2□□□□□ -0.46
CLK3-204ENST00000483723 MAP2K3P46734 347 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms