RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 IGKV6-21A0A0C4DH24 114 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 TMEM218A2RU14 115 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 MFSD2BA6NFX1 497 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 PCP4L1A6NKN8 68 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 SAP18O00422 153 aaKnown RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 FAAHO00519 579 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 CHP2O43745 196 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 CREBL2O60519 120 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 RDH16O75452 317 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 WBP4O75554 376 aaKnown RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 UBL3O95164 117 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 CDRT1O95170 752 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 WISP3O95389 354 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 IFNW1P05000 195 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 IL3P08700 152 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 GIG44P09565 113 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 HIST1H2AGP0C0S8 130 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 SPI1P17947 270 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 PVALBP20472 110 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 S100A11P31949 105 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 EVI2BP34910 448 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 ADRA1AP35348 466 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 STK19P49842 368 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 AKR1D1P51857 326 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 PLK1P53350 603 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 CRISP1P54107 249 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 DIO3P55073 304 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 UCP2P55851 309 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 YBEYP58557 167 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 RPS14P62263 151 aaKnown RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 ILKQ13418 452 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 EXOSC2Q13868 293 aaKnown RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 KLF5Q13887 457 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 PDE7AQ13946 482 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 MICBQ29980 383 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 GGTA1PQ4G0N0 100 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 ADNP2Q6IQ32 1131 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 LPCAT3Q6P1A2 487 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 C3orf33Q6P1S2 294 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 HAGHLQ6PII5 290 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 ANGPTL8Q6UXH0 198 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 FAM122BQ7Z309 247 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 FBXO16Q8IX29 292 aaPredicted RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 DEFB106AQ8N104 65 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 MS4A15Q8N5U1 240 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 B3GNT7Q8NFL0 401 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 OR8J2Q8NGG1 315 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 OR52K2Q8NGK3 314 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 OR4A16Q8NH70 328 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 TCTEX1D2Q8WW35 142 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 C12orf66Q96MD2 445 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 ZNF285Q96NJ3 590 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 PANX1Q96RD7 426 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 RIOK2Q9BVS4 552 aaKnown RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 POLR1EQ9GZS1 481 aaKnown RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 XKR8Q9H6D3 395 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 CACYBPQ9HB71 228 aaKnown RBP4.35□□□□□ -1.71
USP40-213ENST00000483216 GPATCH2LQ9NWQ4 482 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 BTNL2Q9UIR0 455 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 SCML1Q9UN30 329 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 COPS3Q9UNS2 423 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 NPTNQ9Y639 398 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 V9GYQ6 96 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 NRCAMQ92823 1304 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 ZNF318Q5VUA4 2279 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 ANK1P16157 1881 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 TRPM7Q96QT4 1865 aa4.35□□□□□ -1.71
USP40-213ENST00000483216 A0A0G2JMP0 313 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 A0A1B0GUH1 482 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ARGFXA6NJG6 315 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 LRRN3E7EW58 273 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 TLR4O00206 839 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 UBFD1O14562 309 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 ARL6IP5O75915 188 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 CLDN9O95484 217 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 NUDT14O95848 222 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 IL5P05113 134 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SERPIND1P05546 499 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ANXA5P08758 320 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ACSM4P0C7M7 580 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ZDHHC11BP0C7U3 371 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ZNF806P0C7X5 589 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SULT1A3P0DMM9 295 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SULT1A4P0DMN0 295 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SLC2A1P11166 492 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ZNF7P17097 686 aaPredicted RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 RAB3BP20337 219 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 AHCYP23526 432 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 UCP1P25874 307 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 TNFSF9P41273 254 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 RBM34P42696 430 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 RAB5CP51148 216 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 TSPAN5P62079 268 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SSBP1Q04837 148 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 SNTB2Q13425 540 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 SMCO1Q147U7 214 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 EXOSC7Q15024 291 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 ACER2Q5QJU3 275 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 AVPI1Q5T686 147 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ARMC12Q5T9G4 340 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms