RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 DEFB112Q30KQ8 113 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 C16orf87Q6PH81 154 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 LNX2Q8N448 690 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 SPERTQ8NA61 448 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 SLC37A3Q8NCC5 494 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 OR8D4Q8NGM9 314 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 ZNRF4Q8WWF5 429 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 DDOQ99489 341 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 IL20Q9NYY1 176 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 CTSZQ9UBR2 303 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 DOCK11Q5JSL3 2073 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 TRAV38-1A0A0B4J264 116 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 ADAM20O43506 726 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 CCNB2O95067 398 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 PSKH1P11801 424 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 MDKP21741 143 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-210ENST00000472880 ANOS1P23352 680 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 FMO3P31513 532 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 ENTPD1P49961 510 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 PRKXP51817 358 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 HMGA2P52926 109 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 MZT1Q08AG7 82 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 CYP2R1Q6VVX0 501 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 RASSF6Q6ZTQ3 369 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 OR56B2PQ8NGI1 322 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 BCAS4Q8TDM0 211 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 TAF15Q92804 592 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL9A3-210ENST00000472880 TMIGD2Q96BF3 282 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 SLAMF6Q96DU3 332 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 KCNJ15Q99712 375 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 TRIM15Q9C019 465 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 CENPMQ9NSP4 180 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 C1orf123Q9NWV4 160 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 N6AMT1Q9Y5N5 214 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 MGAM2Q2M2H8 2515 aa16.42■□□□□ 0.22
COL9A3-210ENST00000472880 hCG_1807616A0A1W2PRN6 198 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 C5orf63A6NC05 138 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 OOEPA6NGQ2 149 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 SRRM5B3KS81 715 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 ZNF879B4DU55 563 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 ZNF878C9JN71 531 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 P2RY10O00398 339 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 XRCC2O43543 280 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 NDUFA2O43678 99 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 LIPFP07098 398 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 GRPP07492 148 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 SLC2A1P11166 492 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 CFHR2P36980 270 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 CRMP1Q14194 572 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 ARHGAP24Q8N264 748 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 PNLDC1Q8NA58 520 aaKnown RBP16.41■□□□□ 0.22
COL9A3-210ENST00000472880 AQP11Q8NBQ7 271 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 OR6K6Q8NGW6 343 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 TSSK6Q9BXA6 273 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 TNFRSF19Q9NS68 423 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 C14orf119Q9NWQ9 140 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 BAIAP2Q9UQB8 552 aa16.41■□□□□ 0.22
COL9A3-210ENST00000472880 TOX4O94842 621 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 GASTP01350 101 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 GYPBP06028 91 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 SFTPBP07988 381 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 ATP6V1B2P21281 511 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 OMGP23515 440 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 ZNF362Q5T0B9 420 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-210ENST00000472880 METTL11BQ5VVY1 283 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 RUSC1-AS1Q66K80 236 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 ZNF770Q6IQ21 691 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-210ENST00000472880 ZNF511Q8NB15 262 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 SLITRK2Q9H156 845 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 PRDM13Q9H4Q3 707 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 MARCH7Q9H992 704 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 SMURF1Q9HCE7 757 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 NOX4Q9NPH5 578 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 ACTR3BQ9P1U1 418 aa16.4■□□□□ 0.22
COL9A3-210ENST00000472880 ANKRD30BLA7E2S9 258 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 ZNF593O00488 134 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-210ENST00000472880 TBX1O43435 398 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 SOX14O95416 240 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 IFNGP01579 166 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 GYPAP02724 150 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 CRYBA1P05813 215 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 SPI1P17947 270 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 DDOSTP39656 456 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 MAGEA2P43356 314 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 SLC15A1P46059 708 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 SLC25A1P53007 311 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 GRB2P62993 217 aaKnown RBP16.39■□□□□ 0.21
COL9A3-210ENST00000472880 PCK2Q16822 640 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 ZNF826PQ6ZT77 177 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 TRPM8Q7Z2W7 1104 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 OR2T33Q8NG76 320 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 OR8S1Q8NH09 359 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 GATAD2BQ8WXI9 593 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 ARMC1Q9NVT9 282 aa16.39■□□□□ 0.21
COL9A3-210ENST00000472880 PRPF19Q9UMS4 504 aaKnown RBP16.39■□□□□ 0.21
COL9A3-210ENST00000472880 MEGF8Q7Z7M0 2845 aa16.38■□□□□ 0.21
COL9A3-210ENST00000472880 FAM181BA6NEQ2 426 aa16.38■□□□□ 0.21
COL9A3-210ENST00000472880 RIIAD1A6NNX1 92 aa16.38■□□□□ 0.21
COL9A3-210ENST00000472880 ANXA2P07355 339 aaKnown RBP16.38■□□□□ 0.21
COL9A3-210ENST00000472880 HSD11B1P28845 292 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms