RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 LYL1P12980 280 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF133P52736 654 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 DCDP81605 110 aaKnown RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 SNTB1Q13884 538 aaKnown RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 TAF13Q15543 124 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 INPP5JQ15735 1006 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 NKPD1Q17RQ9 610 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 PXDC1Q5TGL8 231 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 CFAP77Q6ZQR2 320 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 CPEB2Q7Z5Q1 589 aaKnown RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 FAM89BQ8N5H3 189 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 OR4K15Q8NH41 348 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 NUDCD2Q8WVJ2 157 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 C10orf35Q96D05 121 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 URM1Q9BTM9 101 aaKnown RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 C1QTNF6Q9BXI9 259 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 SELENOIQ9C0D9 397 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 PTGES2Q9H7Z7 377 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 RAB18Q9NP72 206 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 A0A087WZY1 265 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 TEX13DA0A0J9YY54 714 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 BCAT2O15382 392 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 TLX3O43711 291 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 IGLV3-1P01715 115 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 PRF1P14222 555 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 PSMB6P28072 239 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 SURF2Q15527 256 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 PEG10Q86TG7 708 aaKnown RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 FADS6Q8N9I5 356 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 OR2M3Q8NG83 312 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 NKD1Q969G9 470 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 RAB3CQ96E17 227 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 NKX3-1Q99801 234 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 PNRC2Q9NPJ4 139 aaKnown RBP12.1□□□□□ -0.47
COL6A3-207ENST00000433762 MYOTQ9UBF9 498 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 GPR132Q9UNW8 380 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 POLR1DQ9Y2S0 133 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 IGHV3-20A0A0C4DH32 117 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 AQP7P3A6NL99 342 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 CDK2AP1O14519 115 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 FGF16O43320 207 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 CDC14BO60729 498 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 DKK1O94907 266 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 ATXN8OSP0DMR3 200 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 FPR2P25090 351 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 LUMP51884 338 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-207ENST00000433762 ATP1B3P54709 279 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 PPIAP62937 165 aaKnown RBP12.09□□□□□ -0.47
COL6A3-207ENST00000433762 BTN1A1Q13410 526 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 SMAD2Q15796 467 aaKnown RBP12.09□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF385CQ66K41 422 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-207ENST00000433762 C17orf107Q6ZR85 190 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 GVQW1Q8N7I0 195 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 OR5T2Q8NGG2 359 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 OR8B12Q8NGG6 310 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 OR51E1Q8TCB6 317 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 RHBDD1Q8TEB9 315 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 GAL3ST1Q99999 423 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 NUDT22Q9BRQ3 303 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 AIFM2Q9BRQ8 373 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF471Q9BX82 626 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-207ENST00000433762 TMEM59Q9BXS4 323 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 DUSP15Q9H1R2 295 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-207ENST00000433762 XIRP2A4UGR9 3374 aa12.09□□□□□ -0.47
COL6A3-207ENST00000433762 MFNGO00587 321 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 GNB3P16520 340 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 SLC35A1P78382 337 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 PTCRAQ6ISU1 281 aaPredicted RBP12.08□□□□□ -0.47
COL6A3-207ENST00000433762 GLIPR1L1Q6UWM5 242 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 FOXL2NBQ6ZUU3 175 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF101Q8IZC7 436 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 SPEM1Q8N4L4 309 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 ZBTB44Q8NCP5 570 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 SLC30A7Q8NEW0 376 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 CMBLQ96DG6 245 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 DUSP23Q9BVJ7 150 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 WDR13Q9H1Z4 485 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 METTL7AQ9H8H3 244 aa12.08□□□□□ -0.47
COL6A3-207ENST00000433762 CHMP1AQ9HD42 196 aaPredicted RBP12.08□□□□□ -0.47
COL6A3-207ENST00000433762 A0A0U1RQV5 110 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 H3BML4 177 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 THBS4P35443 961 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 ECI1P42126 302 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 STARD6P59095 220 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 TAS2R46P59540 309 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 OR52W1Q6IF63 320 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 LHFPL1Q86WI0 220 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 PNLDC1Q8NA58 520 aaKnown RBP12.08□□□□□ -0.48
COL6A3-207ENST00000433762 OR4K17Q8NGC6 315 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 EMC6Q9BV81 110 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 FOXQ1Q9C009 403 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 C12orf4Q9NQ89 552 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 TMEM100Q9NV29 134 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 TAS2R3Q9NYW6 316 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 MYEF2Q9P2K5 600 aaKnown RBP12.08□□□□□ -0.48
COL6A3-207ENST00000433762 RARRES3Q9UL19 164 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 GON4LQ3T8J9 2241 aa12.08□□□□□ -0.48
COL6A3-207ENST00000433762 SFT2D2O95562 160 aa12.07□□□□□ -0.48
COL6A3-207ENST00000433762 APOC1P02654 83 aa12.07□□□□□ -0.48
COL6A3-207ENST00000433762 CSN2P05814 226 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms