RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TMPRSS11FQ6ZWK6 438 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 CCDC80Q76M96 950 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 HDDC2Q7Z4H3 204 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 CYP4Z1Q86W10 505 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 PTOV1Q86YD1 416 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 GABRG1Q8N1C3 465 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 GPR137CQ8N3F9 429 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 C17orf78Q8N4C9 275 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 PACRGLQ8N7B6 248 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 TMEM99Q8N816 258 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 Q8N9P0 234 aaPredicted RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 OR9K2Q8NGE7 335 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 VANGL1Q8TAA9 524 aaPredicted RBP5.44□□□□□ -1.54
USP40-202ENST00000409945 TMEM45BQ96B21 275 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 OXGR1Q96P68 337 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 TMEM43Q9BTV4 400 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 SLC19A3Q9BZV2 496 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 NDEL1Q9GZM8 345 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 UBTD1Q9HAC8 227 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 SH3GLB1Q9Y371 365 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 FLVCR1Q9Y5Y0 555 aa5.44□□□□□ -1.54
USP40-202ENST00000409945 A0A087WUJ7 227 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 A0A0B4J2E0 115 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 A0A1B0GX12 115 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 HTR3EA5X5Y0 456 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 CPSF4LA6NMK7 179 aaKnown RBP5.43□□□□□ -1.54
USP40-202ENST00000409945 ZNF726A6NNF4 738 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 SMPD2O60906 423 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 GCM2O75603 506 aaPredicted RBP5.43□□□□□ -1.54
USP40-202ENST00000409945 LYZL6O75951 148 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 TNFAIP8O95379 198 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 OPN1SWP03999 348 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 ATP6V1B2P21281 511 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 FASP25445 335 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 THBS3P49746 956 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 GSK3BP49841 420 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 UBE2NP61088 152 aaKnown RBP5.43□□□□□ -1.54
USP40-202ENST00000409945 HOXC5Q00444 222 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 LIPEQ05469 1076 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 ACSM1Q08AH1 577 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 PMS2P3Q13401 168 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 SLC17A1Q14916 467 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 CST9LP1Q5W188 147 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 MICU2Q8IYU8 434 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 CDK20Q8IZL9 346 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 ADAMTS16Q8TE57 1224 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 CANT1Q8WVQ1 401 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 SLCO4A1Q96BD0 722 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 TPD52L3Q96J77 140 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 CCL19Q99731 98 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 ARHGDIGQ99819 225 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 FOXC2Q99958 501 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 POU2F3Q9UKI9 436 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 RNF115Q9Y4L5 304 aa5.43□□□□□ -1.54
USP40-202ENST00000409945 OR5H1A6NKK0 313 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CLOCKO15516 846 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 TPST1O60507 370 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 RAD51DO75771 328 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 IGHV3-9P01782 118 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 IFNW1P05000 195 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 DANCRP0C864 163 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 THRBP10828 461 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NR2C1P13056 603 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF26P17031 533 aaPredicted RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 COX5AP20674 150 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 AHCYP23526 432 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 PTAFRP25105 342 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 GRPRP30550 384 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CCKARP32238 428 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 KDELR2P33947 212 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 IST1P53990 364 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 KRTAP10-9P60411 292 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 PRPS1P60891 318 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SEC61A1P61619 476 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 ST3GAL3Q11203 375 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SELPLGQ14242 412 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 TAB1Q15750 504 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ACKR1Q16570 336 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NRF1Q16656 503 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 DUSP7Q16829 419 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NIPAL3Q6P499 406 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF704Q6ZNC4 412 aaPredicted RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 ZBTB49Q6ZSB9 765 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CARM1Q86X55 608 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CCDC36Q8IYA8 594 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CIARTQ8N365 385 aaPredicted RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF433Q8N7K0 673 aaPredicted RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 PAPD5Q8NDF8 572 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 SUN5Q8TC36 379 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 FAM162AQ96A26 154 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF524Q96C55 264 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CENPNQ96H22 339 aaPredicted RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 C9orf16Q9BUW7 83 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 FKRPQ9H9S5 495 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NANSQ9NR45 359 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NDUFA13Q9P0J0 144 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 PLEKHA6Q9Y2H5 1048 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 FAM32AQ9Y421 112 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 CCDC168Q8NDH2 2452 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SPG11Q96JI7 2443 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms