RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ZNF257Q9Y2Q1 563 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 AP3M1Q9Y2T2 418 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 OARD1Q9Y530 152 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 POLR3HQ9Y535 204 aaPredicted RBP-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 SPCS1Q9Y6A9 102 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF780BQ9Y6R6 833 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 DDX49Q9Y6V7 483 aaKnown RBP-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 TAF1LQ8IZX4 1826 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 BRCA1P38398 1863 aaKnown RBP-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 SHROOM2Q13796 1616 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 PREX2Q70Z35 1606 aa-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 RNF17Q9BXT8 1623 aaKnown RBP-1.73□□□□□ -2.69
RNU6-540P-201ENST00000384622 VPS8Q8N3P4 1428 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 UBR1Q8IWV7 1749 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 PXDNQ92626 1479 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 TRAV1-2A0A0B4J238 106 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 PGPA6NDG6 321 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 GOLGA6CA6NDK9 693 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 GOLGA6BA6NDN3 693 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 BTBD17A6NE02 478 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 BTNL10A8MVZ5 291 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 NPIPA7E9PJI5 369 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 F5H5P2 479 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 F8W036 122 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 TLR4O00206 839 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 DYNC1I1O14576 645 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 BPY2O14599 106 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 POLR1CO15160 346 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 TCAPO15273 167 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 MAGEB3O15480 346 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CLDN3O15551 220 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZW10O43264 779 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 NMT2O60551 498 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 E2F6O75461 281 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CRTAPO75718 401 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 PIAS1O75925 651 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 TSPAN9O75954 239 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CNIH1O95406 144 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 IFNGP01579 166 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CHRNA1P02708 482 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 GOLGA6DP0CG33 693 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 NPIPA8P0DM63 369 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 TROVE2P10155 538 aaKnown RBP eCLIP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ATF1P18846 271 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CYP11B2P19099 503 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CD52P31358 61 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CEACAM6P40199 344 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 FHITP49789 147 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 INSL3P51460 131 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 IDH3GP51553 393 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 TCTAP57738 103 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 PTENP60484 403 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF90Q03938 601 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 KDSRQ06136 332 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 KLRC3Q07444 240 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 PUDPQ08623 228 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 WASHC5Q12768 1159 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 STX5Q13190 355 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 MAB21L1Q13394 359 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 WTAPQ15007 396 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 EXOSC7Q15024 291 aaKnown RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 BRD3Q15059 726 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 SNAPC1Q16533 368 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 IMMTQ16891 758 aaKnown RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF829Q3KNS6 432 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 KLHL12Q53G59 568 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ALFQ53S48 1182 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 NAA16Q6N069 864 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 C16orf47Q6ZP98 133 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CFAP77Q6ZQR2 320 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 RBPMS2Q6ZRY4 209 aaKnown RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 LANCL3Q6ZV70 420 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 FAM19A5Q7Z5A7 132 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 BAP18Q8IXM2 172 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF595Q8IYB9 648 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 KLHDC8AQ8IYD2 350 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 SFRP1Q8N474 314 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CCDC63Q8NA47 563 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 BHLHE23Q8NDY6 225 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 NPBQ8NG41 125 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR52I1Q8NGK6 324 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR4F5Q8NH21 305 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 Q8TAT8 98 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 GPR148Q8TDV2 347 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ACOT11Q8WXI4 607 aaPredicted RBP-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLAMF9Q96A28 289 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CMTM7Q96FZ5 175 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 VPS39Q96JC1 886 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 DNAJC30Q96LL9 226 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 DRC1Q96MC2 740 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR2A14Q96R47 310 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR2A5Q96R48 311 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR4K3Q96R72 315 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 CITED1Q99966 193 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 APOL4Q9BPW4 351 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 ACBD6Q9BR61 282 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 FUNDC2Q9BWH2 189 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 MMP27Q9H306 513 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 SRMSQ9H3Y6 488 aa-1.74□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC25A22Q9H936 323 aa-1.74□□□□□ -2.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms