RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 RARRES3Q9UL19 164 aa12.65□□□□□ -0.38
CD48-201ENST00000368045 BRWD1Q9NSI6 2320 aa12.65□□□□□ -0.38
CD48-201ENST00000368045 UNC80Q8N2C7 3258 aa12.65□□□□□ -0.39
CD48-201ENST00000368045 RP1P56715 2156 aa12.65□□□□□ -0.39
CD48-201ENST00000368045 TRBV6-7A0A0A0MS04 114 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 CDC14BO60729 498 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 CNR1P21554 472 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 BCKDHBP21953 392 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 VAMP1P23763 118 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ZNF121P58317 390 aaPredicted RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 STARD6P59095 220 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ZNF273Q14593 569 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 PAN3Q58A45 887 aaKnown RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 UQCC3Q6UW78 93 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ZNF574Q6ZN55 896 aaPredicted RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 FADS6Q8N9I5 356 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ZBTB44Q8NCP5 570 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 TMEM185AQ8NFB2 350 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 OR10G3Q8NGC4 313 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 SHDQ96IW2 340 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 OR6C1Q96RD1 312 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ARPC5LQ9BPX5 153 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 URM1Q9BTM9 101 aaKnown RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 TMEM59Q9BXS4 323 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 WDR13Q9H1Z4 485 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 SLC26A1Q9H2B4 701 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 PNRC2Q9NPJ4 139 aaKnown RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 GPR84Q9NQS5 396 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 GON4LQ3T8J9 2241 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ADAMTS20P59510 1910 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 A0A087WZY1 265 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 AQP7P3A6NL99 342 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ZNF726A6NNF4 738 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 TSPAN4O14817 238 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 DKK1O94907 266 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 MPIG6BO95866 241 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 CRHP06850 196 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 LIPCP11150 499 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ZNF43P17038 809 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 AKR1C4P17516 323 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 PSMB6P28072 239 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 LSM6P62312 80 aaKnown RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 SLC35A1P78382 337 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 SNTB1Q13884 538 aaKnown RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 INPP5JQ15735 1006 aaPredicted RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 SLC22A6Q4U2R8 563 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 TMEM128Q5BJH2 165 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 FAM69BQ5VUD6 431 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 NSUN5P2Q63ZY6 315 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ZNF385CQ66K41 422 aaPredicted RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 COMMD2Q86X83 199 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 ADAD2Q8NCV1 583 aaKnown RBP12.64□□□□□ -0.39
CD48-201ENST00000368045 CCDC54Q8NEL0 328 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 OR4K17Q8NGC6 315 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 STOML3Q8TAV4 291 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 SSC4DQ8WTU2 575 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 TMEM41AQ96HV5 264 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 OR5B2Q96R09 309 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 MESP1Q9BRJ9 268 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 CRB3Q9BUF7 120 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 PIGMQ9H3S5 423 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.64□□□□□ -0.39
CD48-201ENST00000368045 ASH2LQ9UBL3 628 aa12.64□□□□□ -0.39
CD48-201ENST00000368045 PCNX3Q9H6A9 2034 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 EXPH5Q8NEV8 1989 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 RANBP2P49792 3224 aaKnown RBP12.63□□□□□ -0.39
CD48-201ENST00000368045 LOC100509620A0A075B734 347 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 A0A0A6YYD4 124 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 FAM25EA8MYX2 175 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 OR2J2O76002 312 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 PMP2P02689 132 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 GP1BAP07359 652 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 PRF1P14222 555 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 ABOP16442 354 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 ATF4P18848 351 aaPredicted RBP12.63□□□□□ -0.39
CD48-201ENST00000368045 ALDH3B1P43353 468 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 PPIAP62937 165 aaKnown RBP12.63□□□□□ -0.39
CD48-201ENST00000368045 NAAAQ02083 359 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 SHBQ15464 509 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 MICBQ29980 383 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 LRRC37A5PQ49AS3 106 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 MARCH1Q8TCQ1 289 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 CASTOR1Q8WTX7 329 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 SPACA9Q96E40 222 aaPredicted RBP12.63□□□□□ -0.39
CD48-201ENST00000368045 SPSB2Q99619 263 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 NICN1Q9BSH3 213 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 DUSP23Q9BVJ7 150 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 FN3KRPQ9HA64 309 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 CHMP1AQ9HD42 196 aaPredicted RBP12.63□□□□□ -0.39
CD48-201ENST00000368045 RAB18Q9NP72 206 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 TAS2R3Q9NYW6 316 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 MBD2Q9UBB5 411 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 GPR132Q9UNW8 380 aa12.63□□□□□ -0.39
CD48-201ENST00000368045 FER1L5A0AVI2 2057 aa12.62□□□□□ -0.39
CD48-201ENST00000368045 ADAMTS9Q9P2N4 1935 aa12.62□□□□□ -0.39
CD48-201ENST00000368045 TEX13DA0A0J9YY54 714 aaPredicted RBP12.62□□□□□ -0.39
CD48-201ENST00000368045 RAB19A4D1S5 217 aa12.62□□□□□ -0.39
CD48-201ENST00000368045 F5H0A9 414 aaPredicted RBP12.62□□□□□ -0.39
CD48-201ENST00000368045 F8VVB4 439 aa12.62□□□□□ -0.39
CD48-201ENST00000368045 F8VWA3 439 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms