RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PRPF19Q9UMS4 504 aaKnown RBP6.83□□□□□ -1.32
HMGB1P39-201ENST00000366304 FRAS1Q86XX4 4008 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 TRBV5-3A0A0A0MS03 114 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 TRAV38-1A0A0B4J264 116 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 TLDC2A0PJX2 215 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 PRORSD1PA6NEY8 169 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 ACOT8O14734 319 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 POLR3GO15318 223 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 NDUFA2O43678 99 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 ANGPTL7O43827 346 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 MT-ND1P03886 318 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 PF4V1P10720 104 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 JUNBP17275 347 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 CD247P20963 164 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 SLC1A6P48664 564 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 RGS6P49758 472 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 CRYBA2P53672 197 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 GP2P55259 537 aaKnown RBP6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 ACSM1Q08AH1 577 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 SCRN3Q0VDG4 424 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 IKZF1Q13422 519 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 KCNJ8Q15842 424 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 PCK2Q16822 640 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 KRTAP27-1Q3LI81 207 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 MAVSQ7Z434 540 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 HDDC2Q7Z4H3 204 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 SDR9C7Q8NEX9 313 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 OR5AU1Q8NGC0 362 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 OR51G2Q8NGK0 314 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 C8orf46Q8TAG6 207 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 UBLCP1Q8WVY7 318 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 LIPHQ8WWY8 451 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 APOBEC3DQ96AK3 386 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 SGTBQ96EQ0 304 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 COG8Q96MW5 612 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 RBP7Q96R05 134 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 SPATA5L1Q9BVQ7 753 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 CHID1Q9BWS9 393 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 VAPAQ9P0L0 249 aa6.82□□□□□ -1.32
HMGB1P39-201ENST00000366304 A6NDX4 124 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 NKX6-3A6NJ46 265 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 EBAG9O00559 213 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 SYNGR1O43759 233 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 PF4P02776 101 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 LYL1P12980 280 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 CTLA4P16410 223 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 TNFRSF1BP20333 461 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 LMO1P25800 156 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 TGM4P49221 684 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 POLR2JP52435 117 aaKnown RBP6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 ERVFRD-1P60508 538 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 HIST1H3AP68431 136 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 MPP2Q14168 576 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 PLA1AQ53H76 456 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 ALG10Q5BKT4 473 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 PAGE3Q5JUK9 113 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 LDLRAD2Q5SZI1 272 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 HIST2H3PS2Q5TEC6 136 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 CORO6Q6QEF8 472 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 MSANTD1Q6ZTZ1 278 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 HIST2H3AQ71DI3 136 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 HDXQ7Z353 690 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 MRPL41Q8IXM3 137 aaKnown RBP6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 CMTM4Q8IZR5 234 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 TFAP2CQ92754 450 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 MYDGFQ969H8 173 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 SLCO4A1Q96BD0 722 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 MPP4Q96JB8 637 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 CPPED1Q9BRF8 314 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 TMEM38AQ9H6F2 299 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 PPP1R3EQ9H7J1 279 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 ELL3Q9HB65 397 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 SDR39U1Q9NRG7 319 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 SLC13A4Q9UKG4 626 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 NDUFAF1Q9Y375 327 aa6.81□□□□□ -1.32
HMGB1P39-201ENST00000366304 GMNCA6NCL1 334 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 M0QX08 132 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 DUS4LO95620 317 aaKnown RBP6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 GRPP07492 148 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 FAHP16930 419 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 RPS6KA3P51812 740 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 CTXN1P60606 82 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 AQP6Q13520 282 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 CNN3Q15417 329 aaKnown RBP6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 OR8G1Q15617 311 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 AANATQ16613 207 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 MEP1BQ16820 701 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 DGUOKQ16854 277 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 KLHL22Q53GT1 634 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 MESTQ5EB52 335 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 LRIF1Q5T3J3 769 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 C18orf65Q6ZTR6 163 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 LHFPL4Q7Z7J7 247 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 FUNDC1Q8IVP5 155 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 MICU2Q8IYU8 434 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 OR5T2Q8NGG2 359 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 OR5L1Q8NGL2 311 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 TAMM41Q96BW9 452 aa6.8□□□□□ -1.32
HMGB1P39-201ENST00000366304 LYZL4Q96KX0 146 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms